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Report for CCDS51914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51914.1 Public Mus musculus 6 Ntf3 23 108 98 CCDS HistoryNCBI Gene:18205Re-query CCDS DB by CCDS ID:51914.1Re-query CCDS DB by GeneID:18205See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51914.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112244.7 ENSMUSP00000107863.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112244.7Link to Ensembl Protein Viewer:ENSMUSP00000107863.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112244Re-query CCDS DB by Protein ID:ENSMUSP00000107863
Original member Current member EBI ENSMUST00000204542.2 ENSMUSP00000144828.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204542.2Link to Ensembl Protein Viewer:ENSMUSP00000144828.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204542Re-query CCDS DB by Protein ID:ENSMUSP00000144828
Original member NCBI NM_001164034.1 NP_001157506.1 Updated not alive Link to Nucleotide Sequence:NM_001164034.1Link to Protein Sequence:NP_001157506.1Re-query CCDS DB by Nucleotide ID:NM_001164034Re-query CCDS DB by Protein ID:NP_001157506
Current member NCBI NM_001164034.2 NP_001157506.1 Accepted alive Link to Nucleotide Sequence:NM_001164034.2Link to Protein Sequence:NP_001157506.1Re-query CCDS DB by Nucleotide ID:NM_001164034Re-query CCDS DB by Protein ID:NP_001157506Link to BLAST:NP_001157506.1
Original member NCBI NM_001164035.1 NP_001157507.1 Updated not alive Link to Nucleotide Sequence:NM_001164035.1Link to Protein Sequence:NP_001157507.1Re-query CCDS DB by Nucleotide ID:NM_001164035Re-query CCDS DB by Protein ID:NP_001157507
Current member NCBI NM_001164035.2 NP_001157507.1 Accepted alive Link to Nucleotide Sequence:NM_001164035.2Link to Protein Sequence:NP_001157507.1Re-query CCDS DB by Nucleotide ID:NM_001164035Re-query CCDS DB by Protein ID:NP_001157507Link to BLAST:NP_001157507.1

Chromosomal Locations for CCDS 51914.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 126101726 126102523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126164730 126164747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGTTACTTCTGCCACGATCTTACAGGTGAACAAGGTGATGTCCATCTTGTTTTATGTGATATTTCTTG
CTTATCTCCGTGGCATCCAAGGCAACAGCATGGATCAAAGGAGTTTGCCGGAAGACTCTCTCAATTCCCT
CATCATCAAGCTGATCCAGGCGGATATCTTGAAAAACAAGCTTTCCAAACAGATGGTGGATGTTAAGGAA
AATTACCAGAGCACCCTGCCCAAAGCAGAGGCACCCAGGGAACCAGAGCAGGGAGAGGCCACCAGGTCAG
AGTTCCAGCCAATGATTGCAACGGACACAGAGCTACTACGGCAACAGAGACGCTACAATTCGCCCCGGGT
CCTGCTGAGTGACAGCACCCCTTTGGAGCCCCCTCCCTTATACCTAATGGAGGATTATGTGGGCAACCCG
GTGGTAGCCAATAGAACCTCACCACGGAGGAAACGCTATGCAGAACATAAGAGTCACCGAGGAGAGTACT
CAGTGTGTGACAGTGAGAGCCTGTGGGTGACCGACAAGTCCTCAGCCATTGACATTCGGGGACACCAGGT
CACAGTGCTGGGGGAGATCAAAACCGGTAACTCTCCTGTGAAACAATATTTTTATGAAACGAGATGTAAA
GAAGCCAGGCCGGTCAAAAACGGTTGCAGGGGGATTGATGACAAACACTGGAACTCTCAGTGCAAAACTT
CGCAAACCTATGTCCGAGCACTGACTTCAGAAAACAACAAACTCGTAGGCTGGCGCTGGATACGAATAGA
CACTTCCTGTGTGTGTGCCTTGTCGAGAAAAATTGGAAGAACATGA

Translation (271 aa):
MVTSATILQVNKVMSILFYVIFLAYLRGIQGNSMDQRSLPEDSLNSLIIKLIQADILKNKLSKQMVDVKE
NYQSTLPKAEAPREPEQGEATRSEFQPMIATDTELLRQQRRYNSPRVLLSDSTPLEPPPLYLMEDYVGNP
VVANRTSPRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCK
EARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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