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Report for CCDS88840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88840.1 Public Mus musculus 15 Faim2 23 108 98 CCDS HistoryNCBI Gene:72393Re-query CCDS DB by CCDS ID:88840.1Re-query CCDS DB by GeneID:72393See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000231171.1 ENSMUSP00000155195.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231171.1Link to Ensembl Protein Viewer:ENSMUSP00000155195.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231171Re-query CCDS DB by Protein ID:ENSMUSP00000155195
Original member Current member NCBI NM_001038658.2 NP_001033747.1 Accepted alive Link to Nucleotide Sequence:NM_001038658.2Link to Protein Sequence:NP_001033747.1Re-query CCDS DB by Nucleotide ID:NM_001038658Re-query CCDS DB by Protein ID:NP_001033747Link to BLAST:NP_001033747.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033747.1 305 Q8K097-2 305 100% 0 0

Chromosomal Locations for CCDS 88840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99500148 99500297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99510582 99510635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99512496 99512591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99512781 99512868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99513349 99513386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99513917 99513956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99514400 99514450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99520302 99520355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99520709 99520773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99521169 99521236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99524701 99524899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99527580 99527594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGACCCAGGGAAAGCTCTCTGTGGCTAACAAGGCCCCCGGGACTGAGGGGCAGCAGCACCAGGCAAATG
GAGAGAAGAAGGATGCTCCGGCAGTGCCCTCGGCGCCACCCTCCTATGAGGAGGCCACCTCTGGAGAGGG
GCTGAAGGCAGGGACCTTCCCCCAGGGCCCAACAGCTGTGCCACTCCATCCAAGCTGGGCCTACGTGGAC
CCCAGACATCACGAGCATTTCACCACCTTCAGCTGGGATGACCAGAAAGTTCGTCGGCTCTTCATCAGAA
AGGTCTATACCATCCTATTGGTCCAGCTGCTGGTGACCTTGGCTGTGGTGGCTCTCTTTACCTTCTGTGA
TGTCGTTAAGGACTATGTCCAGGCTAACCCCGGCTGGTACTGGGCGTCCTATGCCGTGTTCTTTGCAACT
TACCTGACTCTGGCTTGCTGTTCTGGACCCAGGAGACATTTCCCTTGGAACCTGATTCTGCTGACCATCT
TTACCCTGTCCATGGCCTACCTCACTGGGATGCTGTCCAGTTACTACAACACCACATCTGTGCTGCTGTG
CCTGGTCATCACGGCTCTCGTCTGCCTCTCGGTCACCATCTTCAGTTTCCAGACCAAGTTTGACTTCACC
TCCTGTCAGGGTGTGCTGTTTGTGCTGCTCATGACCCTCTTCTTCAGTGGACTCCTCCTCGCTGTCCTCC
TGCCCTTCCAATACGTCCCCTGGCTCCACGCGGTCTATGCTGTACTGGGAGCGGGTGTGTTCACGTTGTT
CCTGGCCTTTGATACCCAGTTGCTGATGGGTAACCGTCGACACTCGCTGAGCCCCGAGGAGTATATTTTT
GGAGCCCTCAACATCTACTTAGACATTATCTATATCTTCACCTTCTTCCTGCAGCTTTTTGGCACCAACC
GGGAATGA

Translation (305 aa):
MTQGKLSVANKAPGTEGQQHQANGEKKDAPAVPSAPPSYEEATSGEGLKAGTFPQGPTAVPLHPSWAYVD
PRHHEHFTTFSWDDQKVRRLFIRKVYTILLVQLLVTLAVVALFTFCDVVKDYVQANPGWYWASYAVFFAT
YLTLACCSGPRRHFPWNLILLTIFTLSMAYLTGMLSSYYNTTSVLLCLVITALVCLSVTIFSFQTKFDFT
SCQGVLFVLLMTLFFSGLLLAVLLPFQYVPWLHAVYAVLGAGVFTLFLAFDTQLLMGNRRHSLSPEEYIF
GALNIYLDIIYIFTFFLQLFGTNRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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