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Report for CCDS21016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21016.1 Public Mus musculus 7 Numbl 23 108 98 CCDS HistoryNCBI Gene:18223Re-query CCDS DB by CCDS ID:21016.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079258.6 ENSMUSP00000078245.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079258.6Link to Ensembl Protein Viewer:ENSMUSP00000078245.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079258Re-query CCDS DB by Protein ID:ENSMUSP00000078245
Original member NCBI NM_010950.2 NP_035080.2 Updated not alive Link to Nucleotide Sequence:NM_010950.2Link to Protein Sequence:NP_035080.2Re-query CCDS DB by Nucleotide ID:NM_010950Re-query CCDS DB by Protein ID:NP_035080
Current member NCBI NM_010950.3 NP_035080.2 Accepted alive Link to Nucleotide Sequence:NM_010950.3Link to Protein Sequence:NP_035080.2Re-query CCDS DB by Nucleotide ID:NM_010950Re-query CCDS DB by Protein ID:NP_035080Link to BLAST:NP_035080.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035080.2 604 O08919 604 100% 0 0

Chromosomal Locations for CCDS 21016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27258938 27258961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27262168 27262252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27264876 27265015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27266555 27266629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27266727 27266801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27268779 27268919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27273955 27274144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27276627 27276932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27279504 27279626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27280754 27281409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGTCCCGCAGCGCGGCGGCCAGCGGCGGACCCAGGAGACCTGATCAGCATTTGTCCCCAGCCCCCTGTG
GGGCCTCGGGGCCCCCTGAAACCTTCAGGACGGAGTCAGACGGGGCAGGCACCATGAACAAGTTACGGCA
GAGTCTGCGGCGGAGGAAGCCAGCCTATGTGCCTGAGGCATCACGCCCACACCAGTGGCAGGCAGATGAG
GATGCGGTGCGCAAAGGCACCTGCAGCTTCCCTGTTAGGTACCTGGGCCACGTGGAAGTGGAGGAGTCCC
GGGGAATGCACGTTTGTGAAGATGCTGTGAAGAAGCTGAAGGCGATGGGCCGGAAGTCCGTGAAGTCTGT
CCTGTGGGTGTCAGCTGATGGGCTCCGAGTGGTGGATGACAAGACCAAGGACCTGCTGGTAGACCAGACC
ATTGAGAAGGTCTCCTTCTGTGCTCCTGATCGCAACCTGGACAAGGCTTTCTCCTACATATGCCGCGACG
GCACCACACGCCGCTGGATCTGCCACTGCTTCCTGGCCCTCAAGGACTCTGGTGAGAGGCTGAGCCATGC
TGTGGGCTGCGCGTTCGCCGCCTGCCTGGAGAGGAAGCAGCGACGGGAGAAGGAATGCGGAGTCACCGCC
GCCTTCGACGCCAGTCGCACCAGCTTTGCCCGTGAGGGCTCCTTCCGCCTGTCGGGGGGCGGGCGGCCTG
CGGAGCGCGAGGCAGGGGACAAGAAGAAAGCCGAAGCAGCAGCTGCTCCTGCTGTGGCTCCTGGACCTGC
CCAGCCTGGGCACGTTTCTCCGACACCAGCCACCACATCCCCTGGAGAGAAGGGAGAGGCGGGCACCCCA
GTGGCTGCAGGCACCACTGCTGCTGCCATTCCCCGGCGCCACGCACCTCTGGAGCAGCTGGTTCGCCAGG
GCTCCTTTCGTGGGTTCCCTGCCCTCAGTCAGAAGAACTCACCTTTCAAACGTCAGCTGAGCCTACGGTT
GAATGAGCTGCCATCAACACTGCAGCGCCGCACGGACTTCCAGGTGAAGGGCACAGTGCCTGAGATGGAG
CCTCCTGGTACCGGGGACAGCGATGGCATCAATGCTCTGTGCACACAGATCAGCTCGTCTTTCGCCAGCG
CTGGGGCCCCAGCGTCAGGGCCACCACCTGCCACAACAGGGACTTCTGCCTGGGGTGAGCCCTCCGTACC
CGCTGCAGCTGCCTTCCAGCCTGGGCACAAGCGGACACCCTCTGAGGCTGAGCGATGGTTGGAGGAAGTG
TCCCAGGTGGCTAAGGCCCAGCAGCAACAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAAGCCACCT
CCGTGCCACCAATGCCCACCATGGCCCCCACCCTTCAACCCTTTTCTGCCCCAGTGGGGCCCTTTGACAC
TGCAGCTGCCCAAGTGGCTGTTTTCCTGCCGCCCACACATATGCAGCCTCCGTTTGTGCCCGCCTACCCA
GGTCTGGGTTATCCACCAATGCCCCGGGTGCCTGTGGTGGGCATCACACCTTCACAGATGGTAGCCAACG
CCTTCTGCTCAGCTGCCCAGCTCCAGCCCCAACCTGCCACACTGCTTGGAAAAGCTGGGGCCTTCCCCCC
ACCTGCTGCACCCAGTGCCCCTGGGGGCCAGGCCCGTCCGCGCCCCAATGGGGCTCCCTGGCCCCCAGAG
CCAGCGCCTGCCCCTGCCCCTGAGTTGGACCCCTTCGAGGCCCAGTGGGCGGCACTAGAAGGCAAACCCG
CTGTGGAGAAACCCTCCAACCCCTTCTCTGGTGACTTGCAGAAGACCTTCGAGATTGAACTGTAG

Translation (604 aa):
MSRSAAASGGPRRPDQHLSPAPCGASGPPETFRTESDGAGTMNKLRQSLRRRKPAYVPEASRPHQWQADE
DAVRKGTCSFPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQT
IEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAFAACLERKQRREKECGVTA
AFDASRTSFAREGSFRLSGGGRPAEREAGDKKKAEAAAAPAVAPGPAQPGHVSPTPATTSPGEKGEAGTP
VAAGTTAAAIPRRHAPLEQLVRQGSFRGFPALSQKNSPFKRQLSLRLNELPSTLQRRTDFQVKGTVPEME
PPGTGDSDGINALCTQISSSFASAGAPASGPPPATTGTSAWGEPSVPAAAAFQPGHKRTPSEAERWLEEV
SQVAKAQQQQQQQQQQQQQQQATSVPPMPTMAPTLQPFSAPVGPFDTAAAQVAVFLPPTHMQPPFVPAYP
GLGYPPMPRVPVVGITPSQMVANAFCSAAQLQPQPATLLGKAGAFPPPAAPSAPGGQARPRPNGAPWPPE
PAPAPAPELDPFEAQWAALEGKPAVEKPSNPFSGDLQKTFEIEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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