NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37513.1 Public Mus musculus 17 Neurl1b 23 108 98 CCDS HistoryNCBI Gene:240055Re-query CCDS DB by CCDS ID:37513.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053020.7 ENSMUSP00000051481.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053020.7Link to Ensembl Protein Viewer:ENSMUSP00000051481.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053020Re-query CCDS DB by Protein ID:ENSMUSP00000051481
Original member Current member NCBI NM_001081656.3 NP_001075125.1 Accepted alive Link to Nucleotide Sequence:NM_001081656.3Link to Protein Sequence:NP_001075125.1Re-query CCDS DB by Nucleotide ID:NM_001081656Re-query CCDS DB by Protein ID:NP_001075125Link to BLAST:NP_001075125.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075125.1 546 Q0MW30 546 100% 0 0

Chromosomal Locations for CCDS 37513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26414965 26414995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26431787 26432332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26438667 26439359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26441078 26441203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26441551 26441795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGGGCAACACGGTGCACCGGACCCTGCCAGACTCCAGCCCTCCTGCACGCCTCCTGGCCACCCGGCCTT
GCTACGGCCCGGGCCCAGAGAGGCGAGCGGTCCTGGGCGAGGCGCCGCGCTTCCATGCGCAGGCTAAGGG
CAAGAACGTGCGTCTGGACGGCCACTCGCGCAGGGCCACGCGGCGGAACAGCTTCTGCAACGGAGTCACC
TTCACGCAGCGCCCCATTCGCCTGTACGAGCAGGTGCGGCTGCGCCTGGTGGCCGTGCGTCCCGGCTGGA
GCGGTGCTCTGCGCTTCGGCTTCACTGCGCACGACCCGTCTCTCATGAGCGCACAGGATATCCCCAAGTA
CGCCTGCCCCGACCTGGTTACGCGGCCTGGTTACTGGGCCAAGGCGCTGCCCGAGAACCTGGCGCTGCGG
GACACAGTGCTGGCCTACTGGGCCGATCGCCACGGTCGCGTCTTCTACAGTGTCAACGATGGTGAGCCAG
TGCTGTTCCACTGCGGCGTGGCTGTGGGCGGCCCACTCTGGGCACTCATCGACGTCTATGGCATCACGGA
CGAAGTACAGCTTCTGGAAAGCACCTTCGCTGACACGCTGACCCCCCTGCGCCTGGGTCAGGCTCGCCTC
AGCGCCTGCCCCCCTCCTGGCAGCCACGACGCTGCCAACTTCGACAACAACGAGCTGGAGAACAACCAGG
TGGTGGCCAAGCTGGGTCACCTGGCTCTCGGCCGTCCCGACGCCGCGGTCCCGTGCGTGGCCCGCGAACG
CCCGAGGCCCGCCTCATCGCCCGCGCTGCTGGACGCCGAGCTGCGCTTCCACGCCACGCGCGGACCCGAC
GTGAGCTTGTCCGCCGACCGCAGGCTAGCCTGCGCGCCCCGCCCCGACGGCGGCCGCACGCTCGTGTTCT
CCGAGCGGCCGCTGCGGCCAGGGGAGAGCCTGTGCGTGGAAGTGGGGCGCCCGGGGCTGGCGGCACCCGC
GGCTGTGGCCTTCGGCATCACGTCCTGCGATCCTGGCGCGCTGCGGCCATCCGAGCTGCCCGCCGATCCC
GCTGCGCTGCTGGACCGCAAGGAATACTGGGTGGTGGCTCGCGCCGGGCCCGTGCCCAGCGGAGGCGACG
CGCTCAGCTTCACGCTGCGACCCGGCGGCGACGTCCTGCTGGCGGTGAACGGGCGCCCGCGGGGACGCCT
GCTGTGCGTGGACACCTCACAGGCGCTCTGGGCCTTCTTCGCGGTACGCGGCGGTGTGGCGGGCCAGCTG
CGTCTCCTGGGTACCCTACAGTCCAGTTCTGAGACCATGACGCCATCAGGGTCCTTCAGTGGCTCCCAGG
ATGACAGCGATTCAGACATGACCTTCGGCGTCAACCAGTCGTCCTCAGCATCAGAATCGTCTCTGGTGAC
AGCCCCCAGCTCCCCTCTGAGTCCCCCGGTGTCCCCAGCCTTCTCCGCACCCGAGCCGACCGGCAGCAGG
AATGGAGAGTGCACAGTGTGCTTCGACAGCGAGGTGGACACGGTCATCTACACGTGTGGACACATGTGCC
TGTGTCATGGCTGCGGCCTGCGGCTCCGAAGGCAGGCACGGGCCTGCTGTCCCATCTGCCGGCGGCCCAT
CAAGGATGTTATCAAGATCTACAGGCCGTAG

Translation (546 aa):
MGNTVHRTLPDSSPPARLLATRPCYGPGPERRAVLGEAPRFHAQAKGKNVRLDGHSRRATRRNSFCNGVT
FTQRPIRLYEQVRLRLVAVRPGWSGALRFGFTAHDPSLMSAQDIPKYACPDLVTRPGYWAKALPENLALR
DTVLAYWADRHGRVFYSVNDGEPVLFHCGVAVGGPLWALIDVYGITDEVQLLESTFADTLTPLRLGQARL
SACPPPGSHDAANFDNNELENNQVVAKLGHLALGRPDAAVPCVARERPRPASSPALLDAELRFHATRGPD
VSLSADRRLACAPRPDGGRTLVFSERPLRPGESLCVEVGRPGLAAPAAVAFGITSCDPGALRPSELPADP
AALLDRKEYWVVARAGPVPSGGDALSFTLRPGGDVLLAVNGRPRGRLLCVDTSQALWAFFAVRGGVAGQL
RLLGTLQSSSETMTPSGSFSGSQDDSDSDMTFGVNQSSSASESSLVTAPSSPLSPPVSPAFSAPEPTGSR
NGECTVCFDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKIYRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH