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Report for CCDS37429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37429.1 Public Mus musculus 17 Rnaset2b 23 108 98 CCDS HistoryNCBI Gene:68195Re-query CCDS DB by CCDS ID:37429.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089119.12 ENSMUSP00000086519.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089119.12Link to Ensembl Protein Viewer:ENSMUSP00000086519.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000089119Re-query CCDS DB by Protein ID:ENSMUSP00000086519
Original member Current member EBI ENSMUST00000179728.1 ENSMUSP00000137303.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179728.1Link to Ensembl Protein Viewer:ENSMUSP00000137303.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179728Re-query CCDS DB by Protein ID:ENSMUSP00000137303
Original member Current member EBI ENSMUST00000231550.1 ENSMUSP00000156290.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231550.1Link to Ensembl Protein Viewer:ENSMUSP00000156290.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231550Re-query CCDS DB by Protein ID:ENSMUSP00000156290
Original member Current member NCBI NM_026611.2 NP_080887.1 Accepted alive Link to Nucleotide Sequence:NM_026611.2Link to Protein Sequence:NP_080887.1Re-query CCDS DB by Nucleotide ID:NM_026611Re-query CCDS DB by Protein ID:NP_080887Link to BLAST:NP_080887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080887.1 259 C0HKG6 259 100% 0 0

Chromosomal Locations for CCDS 37429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6978998 6979098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6981108 6981168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6984139 6984191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6985056 6985113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6988722 6988792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6991681 6991794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6994629 6994674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6996434 6996508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6997898 6998098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGGCGCCGGCGGAGGCTCGCGGCGCGCTCCCGGGCTGGATCTCCGTGCTGGGCTGGGGTCTGGCGCTGT
GCTCTCTGTGCGGGGCGGGCCCACTGTGGAGTGGCAGCCATGAGTGGAAAAAACTAATTTTGACCCAGCA
CTGGCCCCCAACAGTATGCAAGGAGGTTAACAGCTGCCAAGACTCTCTGGATTACTGGACAATACATGGA
CTATGGCCCGATAGAGCAGAAGATTGTAACCAGTCCTGGCACTTTAACTTAGATGAGATTAAGGACCTTT
TGCGAGACATGAAGATCTACTGGCCCGATGTGATTCACCGGTCTTCTAATCGCAGCCAATTCTGGAAACA
TGAGTGGGTTAAACACGGCACCTGTGCTGCCCAGGTAGACGCCCTCAATTCCGAGAAGAAGTACTTTGGG
AAGAGCCTGGATCTGTACAAGCAGATTGACCTCAACAGTGTGCTACAAAAATTTGGGATCAAGCCATCCA
TCAACTACTACCAGCTTGCAGATTTCAAAGATGCACTTACCAGAATCTATGGTGTGGTGCCTAAAATCCA
GTGCCTTATGCCAGAACAGGGAGAGAGCGTGCAGACCGTTGGCCAGATAGAGCTGTGCTTCACCAAGGAG
GACTTACATTTGCGGAACTGCACTGAGCCAGGGGAGCAGCTGTCCTCCAGGCAGGAAGCCTGGCTGGCCA
TGGAGGCTTCTACACATGGGATGATGGTCTGTGAAGACGGTCCAATCTTCTACCCTCCACCTACAAAGAC
CCAACATTGA

Translation (259 aa):
MAPAEARGALPGWISVLGWGLALCSLCGAGPLWSGSHEWKKLILTQHWPPTVCKEVNSCQDSLDYWTIHG
LWPDRAEDCNQSWHFNLDEIKDLLRDMKIYWPDVIHRSSNRSQFWKHEWVKHGTCAAQVDALNSEKKYFG
KSLDLYKQIDLNSVLQKFGIKPSINYYQLADFKDALTRIYGVVPKIQCLMPEQGESVQTVGQIELCFTKE
DLHLRNCTEPGEQLSSRQEAWLAMEASTHGMMVCEDGPIFYPPPTKTQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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