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Report for CCDS35603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35603.1 Public Mus musculus 1 Kansl1l 23 108 98 CCDS HistoryNCBI Gene:68691Re-query CCDS DB by CCDS ID:35603.1Re-query CCDS DB by GeneID:68691See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35603.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068168.9 ENSMUSP00000063843.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068168.9Link to Ensembl Protein Viewer:ENSMUSP00000063843.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000068168Re-query CCDS DB by Protein ID:ENSMUSP00000063843
Original member Current member NCBI NM_001357156.1 NP_001344085.1 Accepted alive Link to Nucleotide Sequence:NM_001357156.1Link to Protein Sequence:NP_001344085.1Re-query CCDS DB by Nucleotide ID:NM_001357156Re-query CCDS DB by Protein ID:NP_001344085Link to BLAST:NP_001344085.1
Original member Current member NCBI NM_177645.4 NP_808313.3 Accepted alive Link to Nucleotide Sequence:NM_177645.4Link to Protein Sequence:NP_808313.3Re-query CCDS DB by Nucleotide ID:NM_177645Re-query CCDS DB by Protein ID:NP_808313Link to BLAST:NP_808313.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344085.1 947 Q5DTI6-3 947 100% 0 0
NP_808313.3 947 Q5DTI6-3 947 100% 0 0

Chromosomal Locations for CCDS 35603.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 66720776 66721006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66721805 66721973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66723263 66723375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66724558 66724612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66725874 66725998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66726687 66726808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66735637 66735744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66738051 66738213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66762048 66762252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66772906 66773027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66773422 66773619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66777967 66778108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66801049 66802139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2844 nt):
ATGACCCCAGCTCTGAAGGAGGCAACAACAAAGGGTATCTGCTTTTCATCTTTGCCAAATACCATGGAAT
CTGACAAGATGCTGTGCATGGAAAGTCCGAGAACTGTAGATGAAAAGCTTAAGGGAGGAGACACTTTCTC
TCAGATGCTGGGATTTCCGACTCCTGAACCTACTCTAAATACTAATTTTGTGAATTTAAAACATTTTGCC
TCCCCTCAGGCTTCAAAACATTTTCAGACAGTTCTTTTAATGAGTTCTAATTCAACACTAAATAAGTATA
ATGAGAATTATAACCAAAAGAAAGTAATGGAGTCCAACTGCAGTAAACTGAAAAATGTACTGTGCAATGG
CAGCAGCATTCAGCTCAGTAAGATCTGCCCTTCTCACTCCGAAAACGAGTTCATCAAAAAGGAACTCTCG
GATACCACAAGCCAGTGCATGAAAGATATACAAATCGTTCTGGATTCAAATCTCACCAAAGACGCTAATG
TAGACAGACTACATCTGCAAAACTGTAAATGGTACCAAAAGAATGCACTTTTGGATAAATTCACTGATAC
TAAGATTAAAAAGGGTTTATTGCAATGTACTCAAAAGAAAATTGGACCTAGCCACTCAGATGTGCCTACT
AGTTCCTCAGCTGCTGAAAAAGAGCAGGAAGTGAATGCTCGTTTACTTCATTGTGTGAGTAAACAGAAAA
TTTTACTTAGCCAGGCTAGAAGAACTCAGAAACACTTGCAGATGCTCCTGGCAAAGCATGTTGTTAAGCA
CTATGGTCAACAGATGAAATTTTCTATGAAACATCAGCTGCCCACAATGAAGATCTTTCATGAACCCACA
ACAGTTCTGAGTAATAGTTTACTTGAACACACTGAAATTAAGCCAGAAGTCAACATATTGGCTTCAGAGA
ATAAGTTTTGGGATGATACAAACAATGGCTTTTCTCAGTGTACAGCTGCAGAAATCCAAAGATTTGCACT
GTCTGCTACAGGGCTGTTGTCTCATGTTGAAGAGGGTCTGGACTCTGACGCCACCGATAGCAGCTCAGAT
GACGAGTTGGATGAATATACCATTAGAAAAAATGTGGCAGTCAACTCTAGTACTGAATGGAAGTGGCTTG
TAGACAGAGCACAAGTTGGCAGCCGATGGACTTGGCTTCAAGCTCAGATTTCAGAGCTGGAATACAAAAT
CCAGCAGCTAACAGATATCCACAGGCAGATTCGTGCCTCTAAGGGGATAGTGATCTTAGAAGAATGTCAG
CTTCCAAAAGACATTTTGAAAAAACAAATACAGTTTTCAAACCAAGCAGTTTCATTAAACACTTCAGTGA
ATTCTCAGGTTCCCCAGAGGAGTGAAGAGCCTTTACCAGAACACGATTTTGAGATGTCACCAAGCAGCCC
TACACTACTTCTTCGAAACATAGAGAAACAGAGTGCACAGTTGACTGAGATCATTAACAGTTTGATTGCC
CCTCTCAACTTGTCTCCAACTTCATCACCCCTCTCTTCCAAATCCTGTAGCCACAAATGTCTGGCTAATG
GCATTTCCAGAAGTGCTTCAGAGAATTTAGATGAGCTCTCTTCCTCCAGTAGCTGGTTACTTAATCAGAA
GCACAGTAAGAAAAGGAGAAAAGACAGGACAAGATTGAAATCTCCATCCTTGGCTATCATGAGTACAGCT
GCGCGAACAAGGCCCCTTCAAAGTTTCCATAAGAGAAAACTCTACAGATTGAGTCCCACTTTTTACTGGA
CTCCCGAGACTTTACCTTCAAAAGAAGCATTTTTAAGTAGCACACAGACGCCTTACACGGGATCACCGTT
CAGTTGGGACAACTGGGAACAGAGTTCCAGGTCTCACCTGTTAAGAGAACAGGTTTCCAAACTCGATTCC
TCCTTCCATCCTGTTTTGTCATTGCCATCAGAAATTCCCCTTCATCTTCATTTTGAGACCTTATTCAAGA
AGACCGACATGAAAGGAGAGCTTGCTGAAAATCAATTTGTAGGTGACTGTCTCATATCACCGCCACCTGC
AGGAGAAAGAACTAGATTTGAAGAATTTGCTTTTCAACGTTCAGAACCAGGATCTCATTGCAATTTTACT
GCTGTCTCTAATGCCAATGTCACATCAAGAACCCAGAATCCATCCTCACAAAATACTTCACGACGGAGGT
TAAGAAGTGAGAGCTCTTATGATATAGATAACATTGTGATTCCCATGTCATTAGTAGCACCAGCCAAATT
AGAGAAACTCCAGTATAAAGAAATACTTACTCCACGCTGGAGGAAGGTTGTTCTTCAGCCCCTTGATGAG
CATAACTTAAACAAAGAAGAGATAGAAGATCTTTCTGATGATGTCTTCTCCCTAAGACACAGAAAATATG
AAGAGAGAGAGCAAGCTAGGTGGTCACTGTGGGAACAAAGCAAATGGCACAGAAGAAATAACAGAGCTTA
CAGTAAAAATGTGGAAGGGCAGGACTTGGTTCTGAAGGAACACTCAAGTGAACTTGGCAGTGCTCAGCAG
GGTACTGCAGAAAGTCCTTTTGAACTCCCAGCAGAAAGCCACAGTCTGTGTGCTCAGGACTCCCTTTCTT
TAAATGATGGTCAAGAAGACAAGTCTTTGCGGTGGGAGCGGCGAGCATTTCCACTGAAGGATGAGGATAC
AGCAGCCTTATTGTGCCAAGATGAAAGAAAGGATCAGACTGGGGGGACAAGCACAGCCTTCCACGATGAA
GTCTTCTGTAGTACTACACCTGAGAGTGGCCACCCTCCAAAGATGCAGTTAGATGGAATGGAAGAATATA
AAAGCTTTGGTATAGGAGTTACTAATGTTAAAAGAAATAGGTGA

Translation (947 aa):
MTPALKEATTKGICFSSLPNTMESDKMLCMESPRTVDEKLKGGDTFSQMLGFPTPEPTLNTNFVNLKHFA
SPQASKHFQTVLLMSSNSTLNKYNENYNQKKVMESNCSKLKNVLCNGSSIQLSKICPSHSENEFIKKELS
DTTSQCMKDIQIVLDSNLTKDANVDRLHLQNCKWYQKNALLDKFTDTKIKKGLLQCTQKKIGPSHSDVPT
SSSAAEKEQEVNARLLHCVSKQKILLSQARRTQKHLQMLLAKHVVKHYGQQMKFSMKHQLPTMKIFHEPT
TVLSNSLLEHTEIKPEVNILASENKFWDDTNNGFSQCTAAEIQRFALSATGLLSHVEEGLDSDATDSSSD
DELDEYTIRKNVAVNSSTEWKWLVDRAQVGSRWTWLQAQISELEYKIQQLTDIHRQIRASKGIVILEECQ
LPKDILKKQIQFSNQAVSLNTSVNSQVPQRSEEPLPEHDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIA
PLNLSPTSSPLSSKSCSHKCLANGISRSASENLDELSSSSSWLLNQKHSKKRRKDRTRLKSPSLAIMSTA
ARTRPLQSFHKRKLYRLSPTFYWTPETLPSKEAFLSSTQTPYTGSPFSWDNWEQSSRSHLLREQVSKLDS
SFHPVLSLPSEIPLHLHFETLFKKTDMKGELAENQFVGDCLISPPPAGERTRFEEFAFQRSEPGSHCNFT
AVSNANVTSRTQNPSSQNTSRRRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPRWRKVVLQPLDE
HNLNKEEIEDLSDDVFSLRHRKYEEREQARWSLWEQSKWHRRNNRAYSKNVEGQDLVLKEHSSELGSAQQ
GTAESPFELPAESHSLCAQDSLSLNDGQEDKSLRWERRAFPLKDEDTAALLCQDERKDQTGGTSTAFHDE
VFCSTTPESGHPPKMQLDGMEEYKSFGIGVTNVKRNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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