2GAM


Conserved Protein Domain Family
Branch

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pfam02485: Branch (this model, PSSM-Id:280621 is obsolete and has been replaced by 426795)
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Core-2/I-Branching enzyme
This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme and core-2 branching enzyme. I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans. This is a fmmily of glycosyl-transferases that are Type II membrane proteins that are found in the endoplasmic reticulum (ER) and Golgi apparatus.
Statistics
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PSSM-Id: 280621
Aligned: 44 rows
Threshold Bit Score: 205.976
Created: 10-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2GAM_A     86 IAYSIVVhH-KIEMLDRLLRAIYMPQNFYCIHVDRKaEESFLAAVQgi------aSCFDNVFVASqLESVVYASWTRVKA 158 house mouse
Q9LR71    103 LAYLISGtKgDSHRMMRTLQAVYHPRNQYVLHLDLEaPPRERMELAmsvktdptfREMENVRVMAqSNLVTYKGPTMIAC 182 thale cress
Q9LFQ0     88 LAYLISGsSgDGQMLKRTLMALYHPNNQYVVHLDREsSPEERLDLSgfvanhtlfQRFQNVRMIVkANFVTYRGPTMVAN 167 thale cress
Q9SS69     54 FAYLISAsKgDAGKLKRLLRSLYHRRNHYLIHLDLEaPEEEHLEMIrfvageplfQPEGNVMIVGkPNLVTYRGPTMLAT 133 thale cress
Q6DBE8     83 FAYLVSGsKgDLESLWRTLRALYHPRNQYIVHLDLEsPVDERSELAsrisndpmySKAGNVYMITkANLVTYTGPTMVAN 162 thale cress
Q9C9A1     49 FAYYITGgRgDNDRISRLLLAVYHPRNRYLIHLGAEaTDAERLALLsdlksvpavNAFGNVDVLGkVDRLSENGASKIAS 128 thale cress
Q9LIQ3     69 IAYLISGsSgDTRRILRLLYATYHPRNRYLLHLDSLaTQSERDRLAvdvqdvpifRAARNVDVIGkPDFAYQRGSSPMAS 148 thale cress
O02312    472 IAFARIVyK-DYEFIEKQVQVSFHPQNAFCFVIDINaSEEFKKRMRal------aACMPNVIVLAdEDPVYSSGHNVNLV 544 Caenorhabditis ele...
O16776    131 TAFARIVfA-DYEFIEKQVQASYHPQNVFCFAIDANsSAEFQRKMKkl------eQCLPNVVVLPvTESYDSKGHNINLA 203 Caenorhabditis ele...
NP_194478  80 FGYLVSGsRgDLESLWRVLRTLYHPRNQYVVHLDLEsPAEERLELAkrvsqdpvfSDVGNVHMITkANLVTYRGPTMVAN 159 thale cress
2GAM_A    159 DLNCMKDLYRmNANWKYLINLCGMDFPIKTNLEIVRKLKCStgENN-LETEKMPPNKe--ERWKKryavvdgKLTNTGIV 235 house mouse
Q9LR71    183 TLQAVSILLReSLHWDWFLNLSASDYPLVTQDDLLYVFSNLsrNVNfIENMQLTGWKl-nQRAKSiiv--dpALYLSKKS 259 thale cress
Q9LFQ0    168 TLHAAAILLReGGDWDWFINLSASDYPLVTQDDLLHTFSYLprDLNfIDHTSNIGWKe-sHRAKPiii--dpGLYMSKKA 244 thale cress
Q9SS69    134 TLHAMALLLRcC-RWDWFINLSASDYPLVTQDDLIYAFSELprDLNfIQHTSRLGWKm-nKRGKPiii--dpGLYSLNKS 209 thale cress
Q6DBE8    163 TLHACAILLKrTPDWDWFINLSASDYPLVTQDDLIHTFSTLdrNLNfIEHTSSLGWKy-kKRAMPlii--dpGLYMLNKS 239 thale cress
Q9C9A1    129 TLHAVSILLKlDPTWNWFIELSALDYPLITQDDLSHVFASVnrSLNfIDHTSDLAWKe-sQRIKPivv--dpALYLARRT 205 thale cress
Q9LIQ3    149 TLHGASILLRlSGTWDWFVSISVDDYPLVTQDELLHIMSHLpkDLNfVNHTSYIGWKe-sRKLKPviv--dpGLYLVEKT 225 thale cress
O02312    545 HNKCLKALLDiP-GWNYALLLQNHDLIMKSVYEMEQIFEWLggANDiFVTHEIGRVDvkkLKWDPmsl--klFINETEMD 621 Caenorhabditis ele...
O16776    204 HYNCMKKLESlR-GWGYLMLLQNHDVITKSVYELDRIFELLggVNDvFMSREIPERRkkhLKWDLksl--klFRNDSKNS 280 Caenorhabditis ele...
NP_194478 160 TLHACAILLKqSKEWDWFINLSASDYPLVTQDDLIDTFSGLdrNLNfIDHSSKLGWKe-eKRAKPlii--dpGLYSTKKS 236 thale cress
2GAM_A    236 kapp-------plktPLFSGSAYFVVTREYVGYVL--ENENIQKLMEWAQDTYSPDEFLWATIqripevpgsFPSSnKYD 306 house mouse
Q9LR71    260 diawttqrrslpnsfRLFTGSAWIMLTRSFLEYCIwgWDNFPRTILMYYTNFVSSPEGYFHTV---------ICNSkEFI 330 thale cress
Q9LFQ0    245 dvfwvsqkrsmptafKLFTGSAWMMLSRPFVDYFIwgWDNLPRIVLMYYANFLSSPEGYFHTV---------ICNArEFT 315 thale cress
Q9SS69    210 eiwwvsnqrslptsfKLFTGSAWTFLSRPFAEYCIigYDNLPRTLLLYYTNFVSSPEGYFQTL---------ICNSdEFK 280 thale cress
Q6DBE8    240 nvllvrpnrslpsafKLF--TAWMALSHAFVEYIIygWDNLPRTLLMYYTNFVSSPEGYFHTV---------ICNVpEFS 308 thale cress
Q9C9A1    206 qlftatekrptpdafKVFTGSPWIVLSRPFLEYCIfgWDNLPRILLMYFNNVILSEECYFHTV---------ICNApEFS 276 thale cress
Q9LIQ3    226 dmffasqkrelpkafKLFSGPSFSILSRNFMEHCVlgTDNFPRTLLMYLSNTPDSLSNYFPTI---------LCNTdTFK 296 thale cress
O02312    622 klll-------ttpmKIVKGWVHCSLSRASVEWMFqkLDPSIFMHQLNQ-GRYGVDEQYFPILqan----aeFGMPgHFT 689 Caenorhabditis ele...
O16776    281 dy-----------elEISSGSVHSSLSRAAVKWLVeeVDLSIFIDQWNQ-TDYGADEQFISTFqms----pdLKMPgHFT 344 Caenorhabditis ele...
NP_194478 237 dvfwvtprrtmptafKLFTGSAWMVLSRSFVEYCIwgWDNLPRTLLMYYTNFLSTPEGYFHTV---------ICNApEYS 307 thale cress
2GAM_A    307 LSDMNAIA------RFVKWQyfegdvsnGAPYPPCSGVhvrsVCVFGAGDLSWML 355 house mouse
Q9LR71    331 NTAIGHDL------HYIAWD-----------SPPKQH-----PRSLSLKDFDNMV 363 thale cress
Q9LFQ0    316 NTTVNSDL------HFISWD-----------NPPKQH-----PHHLTLDDFQRMV 348 thale cress
Q9SS69    281 NTTVNHDL------HYIAWD-----------NPPKQH-----PKILGTRDYRKMV 313 thale cress
Q6DBE8    309 KTAVNHDL------HYIAWD-----------KPPRQH-----PRMLSQRDMGKMi 341 thale cress
Q9C9A1    277 NTTVNGDL------RYMIWD-----------SPPKME-----PHFLTISDFDQMA 309 thale cress
Q9LIQ3    297 KTIMNNNL------LYLASN-----------DTSKER-----YHQLDHKEFTEMV 329 thale cress
O02312    690 DECLQQGKttefitRIALWVp-------ESKCDTNMTRh--aVCIIGLEHFQAVA 735 Caenorhabditis elegans
O16776    345 NECIHNDTaivtisRLARWVpiy--ldrAAHCATGTVRh--dICIFGIEDFRAIS 395 Caenorhabditis elegans
NP_194478 308 STVLNHDL------HFISWD--------R---PPKQH-----PRALTINDTERMI 340 thale cress
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