3FLG,2DAQ,2GFU,2L89,3LYI,3PMI,4LD6,4NS5,5CIU,5VC8,2M1H,2NAS,6IIQ


Conserved Protein Domain Family
PWWP

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cd05162: PWWP 
Click on image for an interactive view with Cn3D
PWWP (Pro-Trp-Trp-Pro) domain
The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids and is composed of a five-stranded antiparallel beta-barrel followed by a helical region. It is found in numerous proteins that are involved in cell division, growth, and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. PWWP domains specifically recognize DNA and histone methylated lysines at the level of the nucleosome. Based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Statistics
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PSSM-Id: 438958
Aligned: 239 rows
Threshold Bit Score: 36.7066
Created: 25-Apr-2007
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:putative methyl-histone binding site [polypeptide binding site]
Evidence:
  • Comment:the aromatic residues form the three-walled methyl-lysine cage that directly participate in histone methylated lysine binding and recognition.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     #  #                                       #                        
3FLG_A         22 GDLVWGKIk--gFSWWPAMVVSWkatskrq----------------amsgmrWVQWFgd---gKFSEVSa---------- 70   human
XP_005771156   25 GNVVLVKLr--gYGQWPAIVCHTsqggplvq-------------asrgantvLLRCFgd---hKYVWGTp---------- 76   Emiliania hux...
XP_005793285  637 GTTVWARSq--gFPFWPARVEAPaaegrycccekvpavedrdtarlrddgwsFVCFLawnpkrAHGWVQg---------- 704  Emiliania hux...
KYQ99675       17 GQVVYGRMp--gYPLWPARVRDPsikissdvkk----------akpktspivLLYFFst---nDYAWLSp---------- 71   Tieghemosteli...
PNW82104      391 GTRVWVKVa--gFPQWPALVFLLqharktevpa---------lvrshkpgrtLVHFYgt---hNYQWATeaqlslwt--- 453  Chlamydomonas...
BBC28461       12 GSRVWIKMp--gYCHWPAIVFPLrycrkaevpa---------llasyqpsrcLVHFYgs---hNYWWAAe---------- 67   Yamagishiella...
BBC28461      317 GTRLWVKTp--gYCPWPAIVFSLrycrktevpd---------llasyqpgstLVHFYge---hNHVWLPdddvaalaaaa 382  Yamagishiella...
ODN02099      136 GCLVMVRTd--gFPYWPGMIRKAgaddhdyddy---------icnsegktfyFVQIFt----kPTAWKWrt--------- 191  Orchesella ci...
ODN02100       99 GCLVMGRVk--tWPSWPGMIRREykgphhndqkrp-----qylskrgnysyyCVQFFdd--itEYKWLVa---------- 159  Orchesella ci...
ODM91180      291 GSLVMASTgckgYKFWPGMIRKAgaedlkrhdy---------sfyeggkmwfCVQYFke--ptPVMWVTp---------- 349  Orchesella ci...
Feature 1                                                                 
3FLG_A         71 ----------dKLVALglfsqhfn------------latfnklVSYRKAMYHALEK 104  human
XP_005771156   77 ----------aMLTQFdpspta---------------lsrvkgQQLRRAYQEAASQ 107  Emiliania huxleyi CCMP1516
XP_005793285  705 ----------dDLLTWeegvrlnyla--------lkasrkahdTLLQRAKKLAIAR 742  Emiliania huxleyi CCMP1516
KYQ99675       72 ----------eYITDFlntnlk----------------nkpksPQWQKAYKLALKY 101  Tieghemostelium lacteum
PNW82104      454 ---vdrrervaALREYaakqqgnkaaal----tlkelqgalmtPDPAADMAAMREL 502  Chlamydomonas reinhardtii
BBC28461       68 ----------sSLTPWtahrearlaalra--larksgvaaatlDELQGALGAAAAS 111  Yamagishiella unicocca
BBC28461      383 adpgeaaerlaGLTAWsrrkkgcssgllaltelegaapvpppgQAIQPAAEVARLV 438  Yamagishiella unicocca
ODN02099      192 ---------ikDLKVFdask--------------------pnrCKDWNLVEKFSAG 218  Orchesella cincta
ODN02100      160 ----------sDLRVYdpardkpls----------kdreqdviRRHAKGMKIINAA 195  Orchesella cincta
ODM91180      350 ----------gDLRVFdaaktnvr-----------yhrnpavvVKFETAVRIARAA 384  Orchesella cincta

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