Conserved Protein Domain Family
PBP1_LacI-like

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cd06290: PBP1_LacI-like 
ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Statistics
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PSSM-Id: 380513
Aligned: 21 rows
Threshold Bit Score: 330.731
Created: 11-Jan-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligandputative dimer
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the LacI family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           ##  #                                            #        
GAD03708   70 TIGVLVqdp----------dsPFYSSILNGIEEVLlaqgYSHIIVTghwnseeEMESMQLLLSRSVDGIIIVtgglsde- 138 Agarivorans albus ...
KUK55379   62 SIGIAVpdt----------igDFYGEVINGIESTAtengYNLIISLnhhiveeELSAVNFFKAKKVDGAVLVttsgdddy 131 Atribacteria bacte...
CEP78502   58 VVGVLVpdl----------fgYYYGIIAESIKEVLikshIEMFLSTfrnsiekEKEALEEFFGRKVDGIIVCttyddeds 127 Thermotogaceae bac...
EKF49149   60 TIGVLVpdi----------rgYHYSDIVMAIESCAfengFDVILSIpkadidnEKHILEKYFKRKIDGIIVAellggeny 129 Thermosipho africa...
NP_229023  59 TIGVLVpnf----------ggFHYNEILTGIEKEAikrdFTLMISTtlhrtsvELERLEVFFAKRVDGIIVCsskkdeeq 128 Thermotoga maritim...
SMC04676   61 TIGVLVpdm----------dnSLFMRIVQAINDAAyrydYTLLVMDsrgeaerEAKIVRAMQELRVDGLILFgtpgthe- 129 Sulfobacillus ther...
ADQ07791   61 TIGIIIqql----------ssWFYSEVVGLLNQYItqrgYGAIFCQl-----iDNIDYFKFLVGRVDGVIVFgyksidkq 125 Caldicellulosirupt...
SEG44674   64 KLGILVpsy----------dvPFTHRLLSGVNSVLsqtsYELIIETtmwdrdrELKELQAMVNSELDAIIMVcglatea- 132 Vibrio hangzhouensis
GAL11932   59 MIGVIAptl----------ndSFSLEILEGIRAACglhhYKLTVQPsywnlhkEEEQLRIFKQQKLDAVIVVigfcple- 127 Vibrio sp. C7
CAD29718   60 IIGLFVldidisesksrvsesTYFSRLINLIIDQAnnfgFQVLVSIits-qkqLSEIRNLFMSRTIFSGIFIgafndeiq 138 Ruminiclostridium ...
Feature 1                    #                #                                   #           
GAD03708  139 -qvvefskKRPIVALGrelea----arlrSIKIENsVGAYMATNHLIqlGHREIVHIKGaeghpdAQQRYEGYCQAMEHA 213 Agarivorans albus ...
KUK55379  132 -vhslieeGYNIVLLDrdshg----lkvdTVKIDNfRGGYIATEYLLnlGHSNILFIEGvpyidsSKERFNGYKKALKDK 206 Atribacteria bacte...
CEP78502  128 -lekfvttGIPVVALDrdqse----lkidIITIENyNSTLKIAQYLYnmGHKRVVHVEGplriysARERKKAFQDFAQKN 202 Thermotogaceae bac...
EKF49149  130 -iekflksGIPLVVLDfsvee----infdVVNVDNmMGAYNAIKYLYenGHRKILFIPGpewspaANEREKGVKRFLESV 204 Thermosipho africa...
NP_229023 129 -lerliksAIPVVVVDreepe----irldNVGIDNyAAGRMCAKYLLekGHRKVLLLKGrkdiysFSDRERGFIDYSTRH 203 Thermotoga maritim...
SMC04676  130 -vlnhlspTGPLVILDrlips----fpgpQVSVNHyEGAKIAVNLLLqyCHFPPAFIAGpyhvssAQERYKGYQDVLYDH 204 Sulfobacillus ther...
ADQ07791  126 alkllhanNVPVVLAEnntef----tnvpRINVNNlQGGYIATKYLIekGCRKIVHISGplesfeSVARYEGYKAALRDF 201 Caldicellulosirupt...
SEG44674  133 -kikeiteDLPVLLVLreqe-----gifpVINIDNeLGGYVATTHLIqrGHRNIVHVRGaednidANQRFAGYKRALASA 206 Vibrio hangzhouensis
GAL11932  128 -mvkeimtDTPVLFVCrdkn-----dwypVLWSDNvIGGRLATNHLIqlGHSHIAHITGpdssldSNDRLTGYRQSLEAS 201 Vibrio sp. C7
CAD29718  139 -ldddiimQHPTIIIDrqsermvkkpnrlVVNLDNfEGAYNATQFLIklGHTRIGHISGdlrklsGIERYEGYKKALEDA 217 Ruminiclostridium ...
Feature 1                  #                                                      #           
GAD03708  214 GLpvklqLVEQGDFteQGGFDAVQRLLTnkr-qfsAIFASNDLTAHGAMLALYKAkrpvPERVSVIGFDDVpgsa---ff 289 Agarivorans albus ...
KUK55379  207 GIkfnsdFILSGDFfiESGYLSIKKYLDkyglnfsAIFASNDQMAMGAIKALNDKgisvPDEVSVIGFDDSyisp---yi 283 Atribacteria bacte...
CEP78502  203 KDfe--vIFIPGGFdaQSGYTSIKQYLKkngkdftAAFFVNDWVALGGLKALREAgyscPEDVSVVGFDDApfak---yl 277 Thermotogaceae bac...
EKF49149  205 DDle-iyYTNIRGYnsQDGKDAIFEYLTknslnftAIFAVNDWTAIGAIDALRIKgikvPDDVSIIGFDDApfld---yi 280 Thermosipho africa...
NP_229023 204 GIdv--kVTPCGYFa-EHGYHAVERYLKkhgrdftAIFAINDLSAFGALKALHDLgvlvPDEVSVMGFDDDpiss---yt 277 Thermotoga maritim...
SMC04676  205 QIsidqnRIEPADFtyQAGYEAMQRLIArvs-dldGVFAVNDLAALGAMKAIYEHglrcPDDIRLVGFDDIhaar---yv 280 Sulfobacillus ther...
ADQ07791  202 GVefdqeLVIEGDFmfQKAYENTKKLLQnkr--idGIFAANDLMAYASMYALDEMgisvPNDVKVVGFDDVdlvglqlsk 279 Caldicellulosirupt...
SEG44674  207 GIkydprLVIDGAFesQLAMESMMKLCKekr-fftAVFAGNDLSALGAMQGLDRSglkiPNNVSVVGFDDLpice---yy 282 Vibrio hangzhouensis
GAL11932  202 GMkidnrLVVRGDFslEGGYRAMKSLLKrgv-kfsGVFIANDLSAFGAMRALNEHglqvPSDISVVGFDDHamcd---yy 277 Vibrio sp. C7
CAD29718  218 GLgfdknLVREGNFldDSGYRLAREILKen---vtAIFCANDVMAISAIKAIKETglsvPDDISVIGFDNTaign---yi 291 Ruminiclostridium ...
Feature 1             #                                         
GAD03708  290 iPPLTTVRQPiFDTGYAAALTILdmlng----gasnNFRIPPVELVKRET 335 Agarivorans albus MKT 106
KUK55379  284 iPPLTTIKQRrEEMGKVAAELLLdrigsqnkkertpRQVIIPVELIERES 333 Atribacteria bacterium 34_128
CEP78502  278 hPSLTTICQPmYEMGLNAGKLIVeklegk-kesrvkRRIILPTEIVVRDS 326 Thermotogaceae bacterium SulfLac1
EKF49149  281 ePKLTTVRQPrWELGYTAAQILIeritsk--rsrlpRNVVIPPELVIRES 328 Thermosipho africanus H17ap60334
NP_229023 278 iPPLTTVRQPrEEMGRVAFEILYerlsg---kkgvaRRVVLPVEIVERES 324 Thermotoga maritima MSB8
SMC04676  281 tPSLTTIRQPmEAIGESAVNIVLkqihg---elvdtKPIVLPGKLIRRES 327 Sulfobacillus thermosulfidooxidans DSM 9293
ADQ07791  280 mPRLTTVRQPiDLMAKTACDILFekiddp--tkkfeSEYILDTQLIIRQS 327 Caldicellulosiruptor hydrothermalis 108
SEG44674  283 iPRLTTIKSPlSEIGEIATKYVLdlis-----nnptEYEIPPIEIIHRNS 327 Vibrio hangzhouensis
GAL11932  278 iPKLTTIKQPlFDIGKHAYSTVLnlmr-----eqpaESFKSTFELVVRNS 322 Vibrio sp. C7
CAD29718  292 mPALTTVNAPlEHIAEACIESLKyfceh---khfkqKEIRVKTDLIIRDS 338 Ruminiclostridium thermocellum ATCC 27405

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