Conserved Protein Domain Family
TFIIE

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smart00531: TFIIE 
Transcription initiation factor IIE
Statistics
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PSSM-Id: 128804
View PSSM: smart00531
Aligned: 10 rows
Threshold Bit Score: 152.914
Threshold Setting Gi: 118431685
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850583    48 GIAAVVLDALARRQWVREEDLAKDLQLHAKQLRKIIRLFEEEKLIMRDHRKETAKGAKMysaavaattdgraedkvklht 127
gi 144922725  28 IEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIKCRMRVETAADGKTt-------------------- 87
gi 256271539  23 GSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLISIHKQREYPPNSKS--------------------- 81
gi 17544578   41 SEHFIIVYHIMRAQCIREENLKARIQFDQKMLRQLLASLKAEKLVKERTITQKNENNRT--------------------- 99
gi 17648007   42 lEDALIIDMLVRNPCMKEDDIGELLRFEKKQLRARITTLRTDKFIQIRLKMETGPDGKAq-------------------- 101
gi 182702114  19 EKGFEVIDVLLEKGETTEEEIAKELGVKLNVVRKLLYKLYD--ARLVDYKRWKDEDTN---------------------- 74
gi 11498363   22 GEVGLILFSLGIEGEFTDDQLSLELGIEINEIRKALFALYE--IGLADYVRRRDDETG---------------------- 77
gi 118431685  32 AHIFHLIYEETPNGGISDDDLESLTGYKQSDIRRILRLLGD--KRIIVSRKGRHPR-KE--------------------- 87
gi 15679663   21 eeAIPVLECLMK-GKVTDEEISEKTQLKLNIVRRILYRLYD--AGVASYKRSKDPETQ---------------------- 75
gi 14521630   18 DEAVEIVKALEKKGEATDEELAEITGIRVNTVRKILYALYDEKL--ADFKRIKDEETG---------------------- 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850583   128 hsyccldYAQARFiSSFLQICDVVRFRLHRMKKRLKDELEDKNTVQEYGCPNCQ-RKYNALDALRLIS-MvDDS-FHCEN 204
gi 144922725  88 -------RHNYYF-INYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCS-STFTDLEANQLFDpM-TGT-FRCTF 156
gi 256271539  82 -------VERVYYyVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL-TKYTQLEAVQLLN-F-DRTeFLCSL 151
gi 17544578  100 -------VSIIFYyINYRAVLNVVRYKIDHMRQKLESREQMDTNRAHYRCGACQ-SSYDMLEINRILDaE-SGR-LICWR 169
gi 17648007  102 -------KVNYYF-INYKTFVNVVKYKLDLMRKRMETEERDATSRASFKCSSCS-KTFTDLEADQLFD-MaTLE-FRCTF 170
gi 182702114  75 -------WYSYTWlPTLEKLPYVVKKKINELIKDLEKKLEFEKNNMFFFCPNCN-VRFTFEEAMDYG--------FSCPG 138
gi 11498363   78 -------WMEYYWrINYDKALDVLKRELEKTAKKLREKIEAETSTIYYICPNMC-VKVSYNDAMELN--------FTCPR 141
gi 118431685  88 -------ATRYFWrIDSDTINVSLLTLKKKVLEKLVVKEAHDSGNSYYTCPRCG-SKYSFDEAFTLD--------FTCPR 151
gi 15679663   76 -------WYTYTWkFEPEKVTEMIKRKHSEIVRKLREALEFEENNMFFVCVNGH-YRFTFDEATEEN--------FTCPE 139
gi 14521630   74 -------WYYYYWhLETKRLPEIIRARKLRELERLKKMLQEETSEVYYHCGNPEhPKLTFDEAFEYG--------FTCPI 138
                        170
                 ....*....|....*....
gi 3850583   205 CNGELVVECNKLTSEEVVD 223
gi 144922725 157 CHTEVEEDESAMPKKDART 175
gi 256271539 152 CDEPLVEDDSGKKNKEKQD 170
gi 17544578  170 CHGDVLADETVVPSRTTRT 188
gi 17648007  171 CGSSVEEDSAAMPKKDSRl 189
gi 182702114 139 CGNMLQEFDNSELIKDLEE 157
gi 11498363  142 CGAMLDYLDCSKAIEKiee 160
gi 118431685 152 CGEVLEEADSREGLERLRR 170
gi 15679663  140 CGSKMEFMDNSEIIQEIKD 158
gi 14521630  139 CGEILQEYDNSAVIEELKK 157
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