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HMol

Organism name:
Hylobates moloch (silvery gibbon)
Isolate:
HMO894
Sex:
male
BioSample:
SAMN12851060
BioProject:
PRJNA575281
Submitter:
University of California, Santa Cruz
Date:
2020/01/03
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_009828535.1 (replaced)
RefSeq assembly accession:
GCF_009828535.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
WKKJ01
Assembly method:
Supernova v. 0; Gap closing based on spanning long-reads (custom script) v. 1; HiRiSe v. 2; Gap closing based on spanning long-reads (custom script) v. 3; HiRiSe v. 4; Gap closing based on spanning long-reads (custom script) v. 6; Scaffold renaming (custom script) v. 11; Removing scaffolds with 100% N content (custom script) v. 12; Scaffold renaming (custom script) v. 13; Fixed issues following contamination report (custom scripts) v. 14-19
Expected final version:
yes
Genome coverage:
70.0x
Sequencing technology:
Illumina; Oxford Nanopore; PacBio; 10X Chromium

IDs: 5433831 [UID] 15732458 [GenBank] 15781498 [RefSeq]

See Genome Information for Hylobates moloch

History (Show revision history)

Comment

Global statistics

Total sequence length2,340,327,933
Total ungapped length2,298,216,275
Gaps between scaffolds0
Number of scaffolds18,392
Scaffold N50107,690,964
Scaffold L508
Number of contigs36,959
Contig N50276,965
Contig L502,400
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18,392

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,340,327,93318,3922,298,216,275107,690,96418,5670