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ASM1855537v1

  • Anomalous assembly.
Organism name:
Anguilla rostrata (American eel)
Isolate:
EN2019
Sex:
female
BioSample:
SAMN18538529
BioProject:
PRJNA718538
Submitter:
Laval University
Date:
2021/05/28
Assembly level:
Chromosome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_018555375.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAGKSO01
Assembly method:
wtdbg2 v. 2.5
Expected final version:
yes
Reference guided assembly:
GCA_013347855
Genome coverage:
42.0x
Sequencing technology:
PacBio Sequel; Oxford Nanopore PromethION

IDs: 10155321 [UID] 27022458 [GenBank]

See Genome Information for Anguilla rostrata

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Nineteen contigs were suppressed in Sept 2021 because they are contaminants

Global statistics

Total sequence length975,437,971
Total ungapped length975,342,637
Gaps between scaffolds0
Number of scaffolds1,112
Scaffold N5056,608,776
Scaffold L508
Number of contigs2,093
Contig N505,018,377
Contig L5050
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)1,112

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_018555595.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM031781.1n/an/a0
Chromosome 2CM031782.1n/an/a0
Chromosome 3CM031783.1n/an/a0
Chromosome 4CM031784.1n/an/a0
Chromosome 5CM031785.1n/an/a0
Chromosome 6CM031786.1n/an/a0
Chromosome 7CM031787.1n/an/a0
Chromosome 8CM031788.1n/an/a0
Chromosome 9CM031789.1n/an/a0
Chromosome 10CM031790.1n/an/a0
Chromosome 11CM031791.1n/an/a0
Chromosome 12CM031792.1n/an/a0
Chromosome 13CM031793.1n/an/a0
Chromosome 14CM031794.1n/an/a0
Chromosome 15CM031795.1n/an/a0
Chromosome 16CM031796.1n/an/a0
Chromosome 17CM031797.1n/an/a0
Chromosome 18CM031798.1n/an/a0
Chromosome 19CM031799.1n/an/a0
unplacedn/an/an/a1,092

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All975,421,2891,111975,325,95556,608,7769810
Chromosome 185,832,084185,822,49485,832,0841000
Chromosome 274,201,666174,194,22474,201,666780
Chromosome 373,584,279173,580,98873,584,279370
Chromosome 467,710,688167,706,89467,710,688400
Chromosome 564,449,410164,444,95264,449,410470
Chromosome 657,693,627157,689,30557,693,627450
Chromosome 756,608,776156,603,03856,608,776610
Chromosome 857,336,481157,331,19157,336,481530
Chromosome 954,564,804154,562,91654,564,804160
Chromosome 1044,843,707144,841,31744,843,707250
Chromosome 1143,321,821143,318,38543,321,821350
Chromosome 1241,626,929141,620,31141,626,929660
Chromosome 1342,140,493142,135,83342,140,493460
Chromosome 1441,188,190141,184,83641,188,190360
Chromosome 1536,916,666136,913,54336,916,666330
Chromosome 1637,665,490137,657,50437,665,490810
Chromosome 1730,799,346130,795,63630,799,346390
Chromosome 1831,500,043131,498,00031,500,043180
Chromosome 1916,065,685116,053,98416,065,6851200
unplaced17,371,1041,09217,370,60423,67050
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,682116,68216,68200