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NHGRI_mPanTro3-v2.0_alt

Organism name:
Pan troglodytes (chimpanzee)
Isolate:
AG18354
Sex:
male
BioSample:
SAMN30216104
BioProject:
PRJNA916737
Submitter:
National Human Genome Research Institute, National Institutes of Health
Date:
2024/01/08
Assembly type:
alternate-pseudohaplotype
Assembly level:
Complete Genome
Genome representation:
partial
Excluded from RefSeq:
  • partial
GenBank assembly accession:
GCA_028858805.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAQQLO02
Assembly method:
Verkko v. 1.4
Expected final version:
no
Genome coverage:
60.0x
Sequencing technology:
PacBio Sequel; Oxford Nanopore PromethION
Linked assembly:
GCA_028858775.2 (principal pseudohaplotype of diploid)

IDs: 20632421 [UID] 52090818 [GenBank]

See Genome Information for Pan troglodytes

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,998,472,174
Total ungapped length2,993,472,174
Total number of chromosomes and plasmids23

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_028858815.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CM054411.2n/an/a
Chromosome 2CM068903.1n/an/a
Chromosome 3CM054414.2n/an/a
Chromosome 4CM054415.2n/an/a
Chromosome 5CM054416.2n/an/a
Chromosome 6CM054417.2n/an/a
Chromosome 7CM054418.2n/an/a
Chromosome 8CM054419.2n/an/a
Chromosome 9CM054420.2n/an/a
Chromosome 10CM054421.2n/an/a
Chromosome 11CM054422.2n/an/a
Chromosome 12CM054423.2n/an/a
Chromosome 13CM054424.2n/an/a
Chromosome 14CM054425.2n/an/a
Chromosome 15CM054426.2n/an/a
Chromosome 16CM054427.2n/an/a
Chromosome 17CM054428.2n/an/a
Chromosome 18CM054429.2n/an/a
Chromosome 19CM054430.2n/an/a
Chromosome 20CM054431.2n/an/a
Chromosome 21CM054432.2n/an/a
Chromosome 22CM054433.2n/an/a
Chromosome 23CM068904.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,998,472,174232,993,472,174140,842,81550
Chromosome 1233,523,1031233,523,103233,523,10300
Chromosome 2200,342,3951200,342,395200,342,39500
Chromosome 3193,341,6951193,341,695193,341,69500
Chromosome 4179,313,1171179,313,117179,313,11700
Chromosome 5180,078,6801180,078,680180,078,68000
Chromosome 6168,845,8801168,845,880168,845,88000
Chromosome 7164,843,0131164,843,013164,843,01300
Chromosome 8147,433,9871147,433,987147,433,98700
Chromosome 9136,439,5451136,439,545136,439,54500
Chromosome 10138,751,7731138,751,773138,751,77300
Chromosome 11122,000,6061122,000,606122,000,60600
Chromosome 12126,935,8571126,935,857126,935,85700
Chromosome 13140,842,8151140,842,815140,842,81500
Chromosome 14117,995,8861116,995,886117,995,88610
Chromosome 15102,708,1011101,708,101102,708,10110
Chromosome 1697,712,329197,712,32997,712,32900
Chromosome 1791,956,294190,956,29491,956,29410
Chromosome 18100,838,6201100,838,620100,838,62000
Chromosome 1997,071,989197,071,98997,071,98900
Chromosome 2073,832,502173,832,50273,832,50200
Chromosome 2178,790,912178,790,91278,790,91200
Chromosome 2249,554,819148,554,81949,554,81910
Chromosome 2355,318,256154,318,25655,318,25610