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IDs: 304498 [UID] 302628 [GenBank] 304498 [RefSeq]
This draft pig genome sequence (Sscrofa10.2) has been released by the International Swine Genome Sequencing Consortium under the terms of the Toronto Statement (Nature 2009, 461: 168). Sscrofa10.2 replaces the previous assembly, Sscrofa10, which had assembly errors. The International ... Swine Genome Sequencing Consortium is coordinating genome-wide analyses, as described in BMC Genomics 2010 11:438. Funders of the pig genome project are acknowledged in this marker paper. The sequence data, from which this assembly was constructed, comprise hierarchical shotgun sequence data providing 4-6x genome coverage from BAC clones representing a minimal tile path across the genome plus >30x genome coverage in whole genome shotgun sequence (WGS) Illumina reads. All the WGS data and most of the BAC data are derived from blood cells of a single Duroc female pig (Duroc 2-14; CHORI-242 BAC library) but also includes some data from other BAC libraries from other breeds. The chromosomes are CM000812-CM00830 and CM001155. They are built from 5343 placed scaffolds whose accessions are in the ranges GL878569-GL882503 and JH114391-JH118402. The 4562 unplaced scaffolds of Sscrofa10.2 have accessions in the ranges GL892100-GL896682 and JH118403-JH118999. Note that scaffolds in the previous assembly that are not in the current assembly have been suppressed. more
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