Panu_2.0

This assembly has been replaced. See current version

Organism name:: Papio anubis (olive baboon)
Isolate:: 1X1155
Sex:: female
BioSample:: SAMN02981400
BioProject:: PRJNA54005
Submitter:: Baylor College of Medicine
Date:: 2012/06/05
Synonyms:: papAnu2
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000264685.1 (replaced)
RefSeq assembly accession:: GCF_000264685.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: AHZZ01
Assembly method:: CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0
Genome coverage:: 2.5x Sanger; 4.5x 454; 85x Illumina
Sequencing technology:: Sanger 3730; 454 FLX; Illumina

IDs: 399268 [UID] 383538 [GenBank] 399268 [RefSeq]

See Genome Information for Papio anubis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000264685.2	≠	GCF_000264685.3	Panu_3.0	Chromosome	Latest GenBank, RefSeq suppressed
GCA_000264685.1	≠	GCF_000264685.2	Panu_2.0	Chromosome	Replaced GenBank, RefSeq suppressed
GCA_000264685.1	=	GCF_000264685.1	Panu_2.0	Chromosome	Replaced GenBank, RefSeq suppressed

Comment

The assembled scaffolds were mapped to the Rhesus Macaque Genome (Jan 2006) by alignment. Thus the chromosome numbers in this assembly were derived from the rhesus macaque chromosome numbers.

Global statistics

Total sequence length	2,948,380,710
Total ungapped length	2,893,254,271
Gaps between scaffolds	9,250
Number of scaffolds	72,500
Scaffold N50	528,927
Scaffold L50	1,604
Number of contigs	198,931
Contig N50	40,262
Contig L50	20,291
Total number of chromosomes and plasmids	21
Number of component sequences (WGS or clone)	198,931

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM001491.1	=	NC_018152.1	0
Chromosome 2	CM001492.1	=	NC_018153.1	0
Chromosome 3	CM001493.1	=	NC_018154.1	0
Chromosome 4	CM001494.1	=	NC_018155.1	0
Chromosome 5	CM001495.1	=	NC_018156.1	0
Chromosome 6	CM001496.1	=	NC_018157.1	0
Chromosome 7	CM001497.1	=	NC_018158.1	0
Chromosome 8	CM001498.1	=	NC_018159.1	0
Chromosome 9	CM001499.1	=	NC_018160.1	0
Chromosome 10	CM001500.1	=	NC_018161.1	0
Chromosome 11	CM001501.1	=	NC_018162.1	0
Chromosome 12	CM001502.1	=	NC_018163.1	0
Chromosome 13	CM001503.1	=	NC_018164.1	0
Chromosome 14	CM001504.1	=	NC_018165.1	0
Chromosome 15	CM001505.1	=	NC_018166.1	0
Chromosome 16	CM001506.1	=	NC_018167.1	0
Chromosome 17	CM001507.1	=	NC_018168.1	0
Chromosome 18	CM001508.1	=	NC_018169.1	0
Chromosome 19	CM001509.1	=	NC_018170.1	0
Chromosome 20	CM001510.1	=	NC_018171.1	0
Chromosome X	CM001511.1	=	NC_018172.1	0
unplaced	n/a	n/a	n/a	63,229

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	2,948,380,710	72,500	2,893,254,271	528,927	126,431	9,250
Chromosome 1	220,367,699	693	216,867,698	610,621	9,117	692
Chromosome 2	187,378,091	545	184,890,802	618,048	6,814	544
Chromosome 3	180,432,695	644	177,399,200	542,430	7,613	643
Chromosome 4	165,299,245	449	162,962,301	649,036	6,348	448
Chromosome 5	178,775,436	579	176,120,622	564,019	7,113	578
Chromosome 6	174,439,528	610	171,942,374	567,075	6,567	609
Chromosome 7	162,156,779	506	159,779,325	601,046	6,319	505
Chromosome 8	139,646,187	523	137,749,154	571,590	5,175	522
Chromosome 9	125,196,307	374	123,323,252	658,393	4,954	373
Chromosome 10	90,941,950	312	89,384,252	543,288	3,909	311
Chromosome 11	132,286,798	419	130,196,252	637,490	5,550	418
Chromosome 12	104,110,932	326	102,791,708	541,469	3,706	325
Chromosome 13	128,036,923	441	126,232,738	530,583	4,764	440
Chromosome 14	123,829,720	449	122,007,833	568,148	4,818	448
Chromosome 15	107,442,819	341	105,755,177	668,714	4,393	340
Chromosome 16	74,645,514	244	73,146,487	551,709	3,699	243
Chromosome 17	90,913,898	358	89,571,820	613,103	3,550	357
Chromosome 18	72,186,199	223	71,253,560	595,960	2,638	222
Chromosome 19	51,301,725	320	49,496,700	317,450	3,802	319
Chromosome 20	71,807,805	199	70,554,530	684,543	3,161	198
Chromosome X	143,131,424	716	140,842,825	372,423	5,668	715
unplaced	224,053,036	63,229	210,985,661	8,187	16,753	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

Panu_2.0

See Genome Information for Papio anubis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics