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RefBeet-1.2.2

Organism name:
Beta vulgaris subsp. vulgaris (beet)
BioSample:
SAMN02182557
BioProject:
PRJNA41497
Submitter:
Beta vulgaris resource
Date:
2015/07/07
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000511025.2 (latest)
RefSeq assembly accession:
GCF_000511025.2 (suppressed)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
AYZS02
Assembly method:
Newbler v. 2.6
Genome coverage:
30.0x
Sequencing technology:
454; Illumina GAIIx; Illumina HiSeq; Sanger

IDs: 360701 [UID] 1858138 [GenBank] 3724658 [RefSeq]

See Genome Information for Beta vulgaris

Pathogen Detection Resources

There are 235 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length566,181,630
Total ungapped length517,420,803
Gaps between scaffolds160
Number of scaffolds40,405
Scaffold N502,013,180
Scaffold L5072
Number of contigs71,207
Contig N5026,519
Contig L505,765
Total number of chromosomes and plasmids9
Number of component sequences (WGS or clone)71,207

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000511035.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM002321.2=NC_025812.220
Chromosome 2CM002322.2=NC_025813.220
Chromosome 3CM002323.2=NC_025814.213
Chromosome 4CM002324.2=NC_025815.238
Chromosome 5CM002325.2=NC_025816.230
Chromosome 6CM002326.2=NC_025817.217
Chromosome 7CM002327.2=NC_025818.224
Chromosome 8CM002328.2=NC_025819.216
Chromosome 9CM002329.2=NC_025820.217
unplacedn/an/an/a40,041

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule566,181,63040,405517,420,8032,013,18030,802160
Chromosome 1AllAssembled moleculeUnlocalized scaffolds51,602,38434,941,03416,661,3502882046,564,59531,335,52415,229,0715,589,0626,427,3621,202,3272,8871,941946770
Chromosome 2AllAssembled moleculeUnlocalized scaffolds50,450,87540,393,38910,057,48638182045,703,97036,689,2019,014,7692,397,9242,945,304873,2962,7352,15957617170
Chromosome 3AllAssembled moleculeUnlocalized scaffolds40,357,46826,577,69913,779,76925121337,217,04924,719,99412,497,0552,495,0273,669,8541,286,2702,1381,35878011110
Chromosome 4AllAssembled moleculeUnlocalized scaffolds53,435,58133,024,24320,411,33856183848,750,11130,506,29518,243,8162,000,9892,692,874992,4033,0601,7491,31117170
Chromosome 5AllAssembled moleculeUnlocalized scaffolds65,392,63952,461,75412,930,88554243059,244,31847,421,40111,822,9172,267,3673,016,228631,6473,7522,98077223230
Chromosome 6AllAssembled moleculeUnlocalized scaffolds65,624,20360,962,7164,661,48745281759,770,76555,537,6544,233,1113,363,1063,375,864539,2553,7233,42729627270
Chromosome 7AllAssembled moleculeUnlocalized scaffolds54,718,57144,152,52210,566,04942182449,800,43640,125,0089,675,4282,462,2003,294,952808,9063,0392,38165817170
Chromosome 8AllAssembled moleculeUnlocalized scaffolds48,026,19238,796,1679,230,02533171643,738,18835,237,1298,501,0592,588,2422,981,662759,4052,7872,24654116160
Chromosome 9AllAssembled moleculeUnlocalized scaffolds50,181,84245,274,1734,907,66943261745,700,68741,207,5654,493,1222,287,7552,402,146436,9562,8162,52029625250
unplacedAssembled molecule86,391,87540,04180,930,68438,1293,8650