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Prin_Dsim_3.0

Organism name:
Drosophila simulans (flies)
Infraspecific name:
Strain: w501
Sex:
female
BioSample:
SAMN06473875
BioProject:
PRJNA377886
Submitter:
Princeton University
Date:
2021/01/25
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_016746395.1 (replaced)
RefSeq assembly accession:
GCF_016746395.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
NGVV01
Assembly method:
FALCON v. Commit 0ed1dd6c9e124b107ee1ce151bb7420c2fcc08b4; Canu v. Commit 10175ecd011b52ae84cc79acc1a7bb452057b0d9; Quickmerge v. Commit a3ce2ad79cc4651eebe7dbe9e0434a91773498d3; FinisherSC v. Imoteph fork, commit 7077dd9cb0db6ac0315b0dbb7080273eb1e1065d
Expected final version:
yes
Genome coverage:
120.0x
Sequencing technology:
PacBio; Illumina HiSeq

IDs: 9182051 [UID] 24715268 [GenBank] 24776088 [RefSeq]

See Genome Information for Drosophila simulans

There are 42 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length131,678,491
Total ungapped length131,677,491
Gaps between scaffolds0
Number of scaffolds96
Scaffold N5023,399,919
Scaffold L503
Number of contigs98
Contig N5022,319,038
Contig L503
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)96

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_016746405.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2LCM028640.1=NC_052520.10
Chromosome 2RCM028641.1=NC_052521.10
Chromosome 3LCM028642.1=NC_052522.10
Chromosome 3RCM028643.1=NC_052523.10
Chromosome 4CM028644.1=NC_052524.10
Chromosome XCM028645.1=NC_052525.10
unplacedn/an/an/a89

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All131,663,51995131,662,51923,399,91920
Chromosome 2L23,857,432123,856,93223,857,43210
Chromosome 2R22,319,038122,319,03822,319,03800
Chromosome 3L23,399,919123,399,91923,399,91900
Chromosome 3R28,149,624128,149,62428,149,62400
Chromosome 41,146,87111,146,8711,146,87100
Chromosome X22,032,836122,032,33622,032,83610
unplaced10,757,7998910,757,799295,69500
MoleculeTotal
Length
Mitochondrion MT14,972