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NHGRI_mPanTro3-v2.0_pri

Organism name:
Pan troglodytes (chimpanzee)
Isolate:
AG18354
Sex:
male
BioSample:
SAMN30216104
BioProject:
PRJNA916736
Submitter:
National Human Genome Research Institute, National Institutes of Health
Date:
2024/01/08
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028858775.2 (latest)
RefSeq assembly accession:
GCF_028858775.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAQQLN02
Assembly method:
Verrko v. 1.4
Expected final version:
no
Genome coverage:
60.0x
Sequencing technology:
PacBio Sequel; Oxford Nanopore PromethION
Linked assembly:
GCA_028858805.2 (alternate pseudohaplotype of diploid)

IDs: 20632411 [UID] 52090828 [GenBank] 53522838 [RefSeq]

See Genome Information for Pan troglodytes

Pathogen Detection Resources

There are 10 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Number of regions with alternate loci or patches2
Total sequence length3,177,756,316
Total ungapped length3,172,756,316
Total number of chromosomes and plasmids26

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear

Regions

NameLocation
PAR1X:695968-3170188
PAR1Y:33476385-35967700
Assembly Unit: Primary Assembly (GCF_028858785.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CM054434.2=NC_072398.2
Chromosome 2CM068905.1=NC_086015.1
Chromosome 3CM054437.2=NC_072401.2
Chromosome 4CM054438.2=NC_072402.2
Chromosome 5CM054439.2=NC_072403.2
Chromosome 6CM054440.2=NC_072404.2
Chromosome 7CM054441.2=NC_072405.2
Chromosome 8CM054442.2=NC_072406.2
Chromosome 9CM054443.2=NC_072407.2
Chromosome 10CM054444.2=NC_072408.2
Chromosome 11CM054445.2=NC_072409.2
Chromosome 12CM054446.2=NC_072410.2
Chromosome 13CM054447.2=NC_072411.2
Chromosome 14CM054448.2=NC_072412.2
Chromosome 15CM054449.2=NC_072413.2
Chromosome 16CM054450.2=NC_072414.2
Chromosome 17CM054451.2=NC_072415.2
Chromosome 18CM054452.2=NC_072416.2
Chromosome 19CM054453.2=NC_072417.2
Chromosome 20CM054454.2=NC_072418.2
Chromosome 21CM054455.2=NC_072419.2
Chromosome 22CM054456.2=NC_072420.2
Chromosome 23CM068906.1=NC_086016.1
Chromosome XCM054457.2=NC_072421.2
Chromosome YCM054458.2=NC_072422.2

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All3,177,739,762253,172,739,762146,288,48650
Chromosome 1231,299,4481231,299,448231,299,44800
Chromosome 2201,579,3341201,579,334201,579,33400
Chromosome 3191,670,1291191,670,129191,670,12900
Chromosome 4178,964,0431178,964,043178,964,04300
Chromosome 5183,320,6971183,320,697183,320,69700
Chromosome 6174,648,8471174,648,847174,648,84700
Chromosome 7155,691,3891155,691,389155,691,38900
Chromosome 8146,288,4861146,288,486146,288,48600
Chromosome 9136,991,3671136,991,367136,991,36700
Chromosome 10140,160,3351140,160,335140,160,33500
Chromosome 11118,863,1531118,863,153118,863,15300
Chromosome 12122,853,2381122,853,238122,853,23800
Chromosome 13144,476,8391144,476,839144,476,83900
Chromosome 14120,149,3421119,149,342120,149,34210
Chromosome 15104,701,1211103,701,121104,701,12110
Chromosome 1693,846,347193,846,34793,846,34700
Chromosome 1790,695,042189,695,04290,695,04210
Chromosome 1894,528,409194,528,40994,528,40900
Chromosome 1999,595,324199,595,32499,595,32400
Chromosome 2068,087,067168,087,06768,087,06700
Chromosome 2178,115,444178,115,44478,115,44400
Chromosome 2251,350,302150,350,30251,350,30210
Chromosome 2359,520,411158,520,41159,520,41110
Chromosome X153,896,3541153,896,354153,896,35400
Chromosome Y36,447,294136,447,29436,447,29400
MoleculeTotal
Length
Mitochondrion MT16,554
Region
Name		LocationScaffold
Count		Total
Length		Ungapped
Length		Scaffold
N50		Spanned
Gaps