Conserved Protein Domain Family
mre11

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TIGR00583: mre11 
DNA repair protein (mre11)
All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria. [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273153
Aligned: 4 rows
Threshold Bit Score: 685.799
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAA32417  27 ADTIRILVSTDNHVGYAERHPVRKDDSWRTFDEIMQIAKKQDVDMVLLGGDLFHENKPSRKSMYQVMRSLRKHCLGMKPC 106 Neurospora crassa
P32829     6 PDTIRILITTDNHVGYNENDPITGDDSWKTFHEVMMLAKNNNVDMVVQSGDLFHVNKPSKKSLYQVLKTLRLCCMGDKPC 85  Saccharomyces cerev...
Q09683    15 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPC 94  Schizosaccharomyces...
CAA98292 107 EDIIKILVATDIHCGYGENKANIHMDAVNTFEEVLQIATEQKVDMILLGGDLFHENNPSREVQHRVTQLLRQYCLNGNPI 186 Caenorhabditis elegans
BAA32417 107 ELEFLSDAAEVFEG-AFPFVNYEDPDINVAIPVFSIHGNHDDPSGDGHYCSLDLLQAAGLVNYFGRVPEADNIHVKPILL 185 Neurospora crassa
P32829    86 ELELLSDPSQVFHYdEFTNVNYEDPNFNISIPVFGISGNHDDASGDSLLCPMDILHATGLINHFGKVIESDKIKVVPLLF 165 Saccharomyces cerev...
Q09683    95 ELELLSDTSLTTGDtAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILL 174 Schizosaccharomyces...
CAA98292 187 ALEFLSDASVNFNQsVFGHVNYYDQNLNVGLPIFTIHGNHDDLSGKG-LTALDLLHESGLVNLFGKHSNIQEFIVSPILL 265 Caenorhabditis elegans
BAA32417 186 QKGRTKMALYGLSNVRDERMHRTFRDNKVRFYRPNQQKNDWFNLLALHQNH---YAHTRT-SYVAENMLPDFMDLVIWGH 261 Neurospora crassa
P32829   166 QKGSTKLALYGLAAVRDERLFRTFKDGGVTFEVPTMREGEWFNLMCVHQNH---TGHTNT-AFLPEQFLPDFLDMVIWGH 241 Saccharomyces cerev...
Q09683   175 QKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNH---SAHTPT-SYLPESFIQDFYDFVLWGH 250 Schizosaccharomyces...
CAA98292 266 RKGETRLALYGIGSQRDDRLVRAFKNNSISFLRPNAGAEDWFNLFVLHQNRprrAMHRSTgNFLPESLIPQFFDLLIWGH 345 Caenorhabditis elegans
BAA32417 262 EHECLISPVRNPE-----TGFHVMQPGSSVATSLVPGERVPKHVAILNIT-GRKFEVDKIPLKTVRPFVTREIVLASD-K 334 Neurospora crassa
P32829   242 EHECIPNLVHNPI-----KNFDVLQPGSSVATSLCEAEAQPKYVFILDIKyGEAPKMTPIPLETIRTFKMKSISLQDV-P 315 Saccharomyces cerev...
Q09683   251 EHECLIDGSYNPT-----QKFTVVQPGSTIATSLSPGETAPKHCGILNIT-GKDFHLEKIRLRTVRPFIMKDIILSEV-S 323 Schizosaccharomyces...
CAA98292 346 EHECKPDPQYVASseavgDGFYILQPGSTVATSLTPEEALQKNAFLIKIK-GRKFASKPIPLQTVRPMVCDELLLDKIpP 424 Caenorhabditis elegans
BAA32417 335 RFKGldkqNNRHEITKRLMVIV--NEMIEEANAEWRAVHAeDDDMDEDMEPPLPLVRLKVDYTAPdG----ARYEVENPH 408 Neurospora crassa
P32829   316 HLRP----HDKDATSKYLIEQV--EEMIRDANEETKQKLAdDGEGDMVAELPKPLIRLRVDYSAPsNtqspIDYQVENPR 389 Saccharomyces cerev...
Q09683   324 SIPPm--vENKKEVLTYLISKV--EEAITEANAQWYEAQG-TVPVVENEKPPLPLIRLRVDYTG--------GYQTENPQ 390 Schizosaccharomyces...
CAA98292 425 GSRPilktDRPKHTDGRYIDEIaiEAKINEMITTAKAKR-------RPRQPELPLIRLKVIYDGd-----wLNITPANAK 492 Caenorhabditis elegans
BAA32417 409 RFSNRFTGKVANHNDVVRFHCNTK 432 Neurospora crassa
P32829   390 RFSNRFVGRVANGNNVVQFYKKRS 413 Saccharomyces cerevisiae S288c
Q09683   391 RFSNRFVGRVANATDVVQFYLKKK 414 Schizosaccharomyces pombe 972h-
CAA98292 493 RIGLRYENVVANAVDMVFIKKNNK 516 Caenorhabditis elegans
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