1I11


Conserved Protein Domain Family
HMG-box_SoxD

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cd22030: HMG-box_SoxD 
Click on image for an interactive view with Cn3D
high mobility group (HMG)-box found in group D SRY-related high-mobility group (HMG) box (Sox) transcription factors
SoxD transcription factors includes three members, Sox5, Sox6, and Sox13. They function as important transcriptional regulators of glial development in the central nervous system. SoxD proteins influence multiple stages of oligodendrocyte development and modulate SoxE protein function. This subfamily also contains SoxD transcription factor homolog EGL-13, which specifies distinct O2 and CO2 sensory neuron fates in Caenorhabditis elegans. SOX-5 plays important roles in various cancer types. It binds specifically to the DNA sequence 5'-AACAAT-3'. SOX-6 plays a key role in cell proliferation, differentiation, and cell fate determination, as well as neurogenesis and skeleton formation. It is a tumor suppressor and downregulated in various cancers. SOX-6 binds specifically to the DNA sequence 5'-AACAAT-3'. SOX-13, also called Islet cell antigen 12 (ICA12), or type 1 diabetes auto-antigen ICA12, modulates T cell specification and is an autoimmune antigen. It binds to the sequence 5'-AACAAT-3'.
Statistics
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PSSM-Id: 438839
Aligned: 22 rows
Threshold Bit Score: 148.617
Created: 8-Apr-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on the structure evidence that Mus musculus SOX-4 binds DNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # ## ## ##   #  #   #      ###  ##  #  ##                 #         # ####   
1I11_A         4 HIKRPMNAFMVWAKDERRKILQAFPdmHNSNISKILGSRWKAMTnlEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 80  house mouse
Q23045       328 HIKRPMNAFMVWARDERRKILKAYPdmHNSNISKILGSRWKGMSnsEKQPYYEEQSRLSKLHMEQHPDYRYRPRPKR 404 Caenorhabditis ele...
NP_001004385 529 HIKRPMNAFMVWAKDERRKILQAFPdmHNSNISKILGSRWKAMTnlEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 605 chicken
AWT24670     468 HIKRPMNAFMVWAKDERRKILQAFPdmHNSNISKILGSRWKAMTnlEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 544 Menado coelacanth
P35711       555 HIKRPMNAFMVWAKDERRKILQAFPdmHNSNISKILGSRWKAMTnlEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 631 human
P40649       391 HIKRPMNAFMVWAKDERRKILQAFPdmHNSSISKILGSRWKSMSngEKQPYYEEQARLSRQHLERYPDYKYKPRPKR 467 African clawed frog
NP_001352418 408 HIKRPMNAFMVWAKDERRRILQAFPdmHNSSISKILGSRWKSMSnqEKQPYYEEQARLSRQHLERYPDYKYKPRPKR 484 zebrafish
XP_005991776 421 HIKRPMNAFMVWAKDERRKILQAFPdmHNSSISKILGSRWKAMSnmEKQPYYEEQARLSRQHLEKYPDYKYQPRPKR 497 coelacanth
XP_007897660 442 HIKRPMNAFMVWAKDERRKILQTYPdmHNSSISKILGSRWKSMSnvEKQPYYEEQARLSRQHLERYPDYKYKPRPKR 518 elephant shark
CDQ76284     433 HIKRPMNAFMVWAKDERRRILQAFPdmHNSSISKILGTRWKSMSnqEKQPYYEEQARLSRQHLERYPDYKYKPRPNA 509 rainbow trout

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