1KQQ,2KK0


Conserved Protein Domain Family
ARID_ARID3

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cd16867: ARID_ARID3 
Click on image for an interactive view with Cn3D
ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing proteins ARID3A, ARID3B, ARID3C, dead ringer (Dri) from Drosophila melanogaster, and similar proteins
The ARID3 subfamily includes AT-rich interactive domain (ARID, also known as BRIGHT)-containing proteins ARID3A, ARID3B and ARID3C, which are the most direct mammalian counterparts of the Drosophila "dead ringer" protein Dri. They consist of an acidic N-terminal region of unknown function, the central ARID matrix association (or attachment) region (MAR)-DNA binding domain, a SUMO-I conjugation (SUMO) motif, and a multifunctional homomerization/nuclear export REKLES domain in the C-terminal third of the molecule. The ARID domain in this subfamily has been described as the "extended" or e-ARID due to additional conserved sequences at both the N and C termini of the core ARID region. The REKLES domain is found only in the ARID3 subfamily. It has co-evolved with and regulates functional properties of the ARID DNA-binding domain.
Statistics
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PSSM-Id: 350631
Aligned: 10 rows
Threshold Bit Score: 240.466
Created: 11-Sep-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1KQQ; Drosophila melanogaster Dead Ringer binds DNA through its ARID domain, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                        #######                        # ##  #       ###
1KQQ_A        13 VRQLYEINDDPKRKEFLDDLFSFMQKRGtPINRLPIMAKSVLDLYELYNLVIARGGLvDVINKKLWQEIIKGLHLPsSIT 92  fruit fly
2KK0_A        23 FKQLYELDGDPKRKEFLDDLFSFMQKRGtPVNRIPIMAKQVLDLFMLYVLVTEKGGLvEVINKKLWREITKGLNLPtSIT 102 human
Q4H3P5       240 FKQLYEIDDDIKRKEFLDDLFSFMQKRGtPVNRIPIMAKQVLDLYQLYRLVVEKGGLvEVINKKIWREITKGLNLPsSIT 319 Ciona intestinalis
A6NKF2       104 FKQLYELDADPKRKEFLDDLFSFMQKRGtPVNRVPIMAKQVLDLYALFRLVTAKGGLvEVINRKVWREVTRGLSLPtTIT 183 human
Q8IVW6       206 FAKLYELDGDPERKEFLDDLFVFMQKRGtPINRIPIMAKQILDLYMLYKLVTEKGGLvEIINKKIWREITKGLNLPtSIT 285 human
Q8MQH7       193 FKQLYELSTDSKRKEFLDDLFSYMQKRGtPVNRIPIMAKQVLDLYELYNLVVAKGGLvEVINKKQWREITKGLNLPaSIT 272 purple urchin
KXJ22676     126 FKQLYELGEEADRKVFLDDLFTFMQKRGtPVNRVPIMAKQTLDLYKLFRLVVDKGGLvEVINKKIWREIIKGLNLPaSVT 205 Exaiptasia pallida
XP_011406312 101 FRQLYNLSDESDRKDFLDKLFDYMAKKGtPITRIPIMAKQPLDMYKLFKLVVERGGLvEVIKKKAWRDIAKELNLPaSIT 180 Amphimedon quee...
O02326       172 FKQLYELSDDVKRKEWLDDWLNFMHRIGkPVTRIPIMAKQVLDLYELYRLVVQHGGLvEIINKKLWREITKGLNLPsSIT 251 Caenorhabditis ...
XP_003739689 186 KFLLYELSDDPKRKEFLDDLFAFMHNRGtPVNRIPIMAKQVLDLYELYRLVVARGGLvEVINKKIWREITKGLNLPsSIT 265 western predato...
Feature 1        # ### #                             ##
1KQQ_A        93 SAALTLRTQYMKYLYPYECEKKNLstPAELQAAIDGNR 130 fruit fly
2KK0_A       103 SAAFTLRTQYMKYLYPYECEKRGLsnPNELQAAIDSNR 140 human
Q4H3P5       320 SAAFTLRTQYMKYLYPFECEREKLsvPSELQAAIEGNR 357 Ciona intestinalis
A6NKF2       184 SAAFTLRTQYMKYLYPYECETRALssPGELQAAIDSNR 221 human
Q8IVW6       286 SAAFTLRTQYMKYLYAYECEKKALssPAELQAAIDGNR 323 human
Q8MQH7       273 SAAFTLRTQYMKYLYPYECEKKGLssPSELQSAIDGNR 310 purple urchin
KXJ22676     206 SAAFTLRTQYMKYLYPYECFKRKLssPSELQSAIDGNR 243 Exaiptasia pallida
XP_011406312 181 SAAFTMRSQYVKYLYPYECEVESLsdPKELQLAIESNK 218 Amphimedon queenslandica
O02326       252 SAAFTLRTQYQKYLYDYECEKEKLsnQSDLQQAIDGNR 289 Caenorhabditis elegans
XP_003739689 266 SAAFTLRTQYMKYLYPYECSKEKLsePEELQAAIDGNR 303 western predatory mite

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