1I3Q,3H0G,2F3I


Conserved Protein Domain Family
RPOL8c

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smart00658: RPOL8c 
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RNA polymerase subunit 8
subunit of RNA polymerase I, II and III
Statistics
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PSSM-Id: 197821
Aligned: 12 rows
Threshold Bit Score: 151.784
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1I3Q_H         2 SNTLFDDIFQVSEVDPG-------------RYNKVCRIEAASTtQDQCKLTLDINVELFPVAAQDSLTVTIASSLNLEDT 68  baker's yeast
XP_003256616  81 AGILFEDIFDVKDIDPEg-----------kKFDRVSRLHCESE-SFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGT 148 White-cheeked G...
NP_649352      2 AGVLFEDIFNVKDMDPEg-----------kKFDRVSRLHCESE-SFKMDLILDINSWLYPMELGDKFRLVLATTLREDGC 69  fruit fly
NP_498036      2 AGIIFDDMFKVKSVDPDg-----------kKFDRVSRYFCDAE-SFKMELIIDINSQIYPLKQNDKVRLVLATTLREDGL 69  nematode
NP_191519      4 NIIMFEDIFVVDKLDPDg-----------kKFDKVTRVEARSH-NLEMFMHLDVNTEVYPLAVGDKFTLAMAPTLNLDGT 71  thale cress
NP_175827      4 NIILFEDIFVVDQLDPDg-----------kKFDKVTRVQATSH-NLEMFMHLDVNTEVYPLAVGDKFTLALAPTLNLDGT 71  thale cress
AAA91458       2 AGILFEDIFDVKDIDPEa-----------kKFDRVSRLHCESE-SFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGT 69  human
XP_001712964   6 IQYQCNDIIKILSKDPDg-----------kLYEKVSRIIAQSY-YLNMELWFDINSHLFPIYVGDSLNLSIYTISDESFN 73  Bigelowiella na...
3H0G_H         3 ESVLLDEIFTVTSVDKQ-------------KYQRVSRITAVSG-QNDMNLTLDINSQIYPLEKDATFSLQITSNLNSPD- 67  Schizosaccharom...
XP_001713366  18 MIEICRSQFKVEHIENYsfgndkqgnnmqnNFFKVSKIFSKEI-YGQSEFFLDYNSEIYKIQNEDILDVLIIGFSNQISD 96  Guillardia theta
CAA68926       3 ESVLLDEIFTVTSVDKQ-------------KYQRVSRITAVSG-QNDMNLTLDINSQIYPLEKDATFSLQITSNLNSPD- 67  fission yeast
2F3I_A         2 AGILFEDIFDVKDIDPEg-----------kKFDRVSRLHCESE-SFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGT 69  house mouse
1I3Q_H        69 PANDS----SAtrswrpPQAGDRSLADDYDYVMYGTAYKFEEVSKD-----LIAVYYSFGGLLMRLEGNYRNLNN-LKQE 138 baker's yeast
XP_003256616 149 LDDGE----YN------PTDDRPSRADQFEYVMYGKVYRIEGDETSteaatRLSAYVSYGGLLMRLQGDANNLHG-FEVD 217 White-cheeked G...
NP_649352     70 PDSGE----YN------PMEHEGTRADSFEYVMYGKIYRIEGDEAHne-asRLSAYVSFGGLLMRLQGDANNLHG-FEVD 137 fruit fly
NP_498036     70 ADEGE----YD------PKAEYP-RIKQYEYVMYGKVYRLEDDDTGtd-ggKLAAYASFGGLLMRLKGEAINLHG-FEVD 136 nematode
NP_191519     72 PDTGY----FT------PGAK-KTLADKYEYIMHGKLYKISERDGKt---pKAELYVSFGGLLMLLQGDPAHISH-FELD 136 thale cress
NP_175827     72 PDTGY----FT------PGAK-KTLADKYEYIMHGKLYKISERDGKt---pKAELYVSFGGLLMLLKGDPAHISH-FELD 136 thale cress
AAA91458      70 LDDGE----YN------PTDDRPSRADQFEYVMYGKVYRIEGDETSteaatRLSAYVSYGGLLMRLQGDANNLHG-FEVD 138 human
XP_001712964  74 STIKD----NQ----------FSYLVDKYEYFMIGKVFNIITSIERet--sFNLIYASFGGLLLKLKVKKKYLKS-FLPN 136 Bigelowiella na...
3H0G_H        68 ------------------------LKEAADYIMYGKVYRVEEAKDE-----KVSVYVSFGGLLMAIEGSHRKLYR-LSLD 117 Schizosaccharom...
XP_001713366  97 FNSFElesnNE------NINLIKEYIREFEYVMQGMIFHTGLEKN------LFFFYTSFGGLILKFYSNRNYSKDpLLMD 164 Guillardia theta
CAA68926      68 ------------------------LKEAADYIMYGKVYRVEEAKDE-----KVSVYVSFGGLLMAIEGSHRKLYR-LSLD 117 fission yeast
2F3I_A        70 LDDGE----YN------PTDDRPSRADQFEYVMYGKVYRIEGDETSteaatRLSAYVSYGGLLMRLQGDANNLHG-FEVD 138 house mouse
1I3Q_H       139 -NAYLLIRR 146 baker's yeast
XP_003256616 218 sRVYLLMKK 226 White-cheeked Gibbon
NP_649352    138 qHMYLLMKR 146 fruit fly
NP_498036    137 mNLYLLMKK 145 nematode
NP_191519    137 qRLFLLMRK 145 thale cress
NP_175827    137 qRLFLLMRK 145 thale cress
AAA91458     139 sRVYLLMKK 147 human
XP_001712964 137 sHLCLGLNR 145 Bigelowiella natans
3H0G_H       118 -HVYLLLRR 125 Schizosaccharomyces pombe 972h-
XP_001713366 165 yNIFLFIRK 173 Guillardia theta
CAA68926     118 -HVYLYLeg 125 fission yeast
2F3I_A       139 sRVYLLMKK 147 house mouse
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