1G9Q,1KHZ,1MQW,1V8R,1VHZ,1VIU


Conserved Protein Domain Family
ADPRase_NUDT5

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cd03424: ADPRase_NUDT5 (this model, PSSM-Id:239516 is obsolete and has been replaced by 467530)
Click on image for an interactive view with Cn3D
ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.
Statistics
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PSSM-Id: 239516
Aligned: 275 rows
Threshold Bit Score: 67.1297
Created: 12-Sep-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1MQW; M. tuberculosis ADPRase binds AMPCPR and 3Mn2+; defined at 3.5A contacts.
    View structure with Cn3D
  • Structure:1KHZ_B; Escherichia coli ADPRase binds AMPCPR and 3Mg2+; defined at 3.5A contacts.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                  #                ###                           #   # 
1G9Q_A       56 RGHAAVLLPFDpv----rdEVVLIEQIRIaaydtsetPWLLEMVAGMIEe--------------GESVEDVARREAIEEA 117 Escherichia coli
1MQW_A       42 HFGAVAIVAMDdn-----gNIPMVYQYRHty-----gRRLWELPAGLLDv-------------aGEPPHLTAARELREEV 98  Mycobacterium tu...
AAF84810     68 GGLAAIILAVTpe-----eRIIFVEQFRIpi-----qQRTIEMPAGLVGdi-----------daGESIEQAAIRELEEET 126 Xylella fastidio...
YP_162776    39 NMGAAVILALDg------eYVILVEQPRIpf-----gAHTIELPAGLIGdt-----------dsHESVETAAARELIEET 96  Zymomonas mobili...
XP_640150    48 DTDGVDILATVkkd--gkkYLIVVVQYRVpv-----dNLVIEFPAGLVDn--------------DENFVNSAIRELKEET 106 Dictyostelium di...
ZP_00577979  35 GIHAAVILAIDeda--rgrHAILVEQYRVpl-----kRQCLELPAGLVGdd-----------saGEAAEVAAARELEEET 96  Sphingopyxis ala...
YP_496155    37 NIKAAVILAIDd------gHVLLVEQFRVpl-----gRPCIELPAGLIGdea---------gaeNEDAATAASRELEEET 96  Novosphingobium ...
EAQ86785     63 HTPVGTLIPNIyknnqnqwCTILVQQFRPqy-----eSDTIEFPAGFINnktkdnnnnrtdadpVETAKQAAVRELEEET 137 Chaetomium globo...
EAR85462     51 PYDGVATFAIIkkdn-qpsKLIIIANYRApv-----dKFVLEIPAGLMD---------------TPDLVQNAIRELKEET 109 Tetrahymena ther...
EAR90460     58 ECNGVDVCPIIkykd-grrKLLLIANYRPpv-----nAYTVEFPAGLLD---------------DGDLLENARRELKEET 116 Tetrahymena ther...
Feature 1                                      #                          #                     
1G9Q_A      118 GLIVk------RTKPVLSFLAs----PGGTSERSSIMVGEvdattasg--ihgladenE-DIRVHVVSr-------EQAY 177 Escherichia coli
1MQW_A       99 GLQAs------TWQVLVDLDTa----PGFSDESVRVYLATglrevgr-----peahheEaDMTMGWYPi-------AEAA 156 Mycobacterium tu...
AAF84810    127 GWTAd-----hAGILLIGPVS-----SGASSERIAFVRATglrkvss-----gggdvdE-DIVVHEIPr-------TQAA 183 Xylella fastidio...
YP_162776    97 GYQAd------IIENLGQFASs----PGMTSESFFLVRAQnltrise-----gggvddE-EITVHRVKl-------SELP 153 Zymomonas mobili...
XP_640150   107 GYRTtp----dKVLLTSPILPl---eCGMSCANARMVVIDleetice----eqelegsE-NIDIFYLPmdnlfnelEELR 174 Dictyostelium di...
ZP_00577979  97 GYRAa------TWRTVGEFYSs----PGMVSESFTLLVATgltkvga-----gggvggE-DIVVHRVPl-------NGIE 153 Sphingopyxis ala...
YP_496155    97 GYRPg------RIESLGEFHSs----PGMVTEAFTLFRAYdlekvse-----gggvegE-GITVHRVAl-------TEIE 153 Novosphingobium ...
EAQ86785    138 TKTGt------VLSTSPPLTSg----PVPVAARLAAVLVHard------------kegE-EAGRQRLDegefavevQETT 194 Chaetomium globo...
EAR85462    110 GYTAeeqplkvSNKESPPTYTd----PWRSCSCTKSVFLEvngnkqeninpkqdledaE-SIFVHLIDide--nitDTLT 182 Tetrahymena ther...
EAR90460    117 GYTA-------DEIKVLDYCPllrtdPWKSNETTKVVIAYidgdkecninpkqdleteE-NIDIFTVDl------nEKFM 182 Tetrahymena ther...
Feature 1                                   
1G9Q_A      178 QWVEegk-----idnAASVIALQWLQLH 200 Escherichia coli
1MQW_A      157 RRVLrge-----ivnSIAIAGVLAVHAV 179 Mycobacterium tuberculosis
AAF84810    184 AWLVqkmha-gfamdPKLWAALWLIDHA 210 Xylella fastidiosa 9a5c
YP_162776   154 DFLEqk-------rqQGLVIDAKLLLLL 174 Zymomonas mobilis subsp. mobilis ZM4
XP_640150   175 KKLNcv-------vsIQLYTFALGLNFN 195 Dictyostelium discoideum AX4
ZP_00577979 154 DFVAakrae-gcgidVRVAMLLAGGLLA 180 Sphingopyxis alaskensis RB2256
YP_496155   154 SFLSar-------raEGYAIDVRMLLLL 174 Novosphingobium aromaticivorans DSM 12444
EAQ86785    195 RVATrttklkitiplDTSWIVFKGCNES 222 Chaetomium globosum CBS 148.51
EAR85462    183 TLAEkhgy----iisSTLWCFAQGIQFA 206 Tetrahymena thermophila SB210
EAR90460    183 ENLRkivee--nnyqMTLQMYSLCLGFS 208 Tetrahymena thermophila SB210

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