Conserved Protein Domain Family
SID-1_RNA_chan

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pfam13965: SID-1_RNA_chan (this model, PSSM-Id:404791 is obsolete and has been replaced by 464057)
dsRNA-gated channel SID-1
This is a family of proteins that are transmembrane dsRNA-gated channels. They passively transport dsRNA into cells and do not act as ATP-dependent pumps. They are required for systemic RNA interference. This family of proteins belong to the CREST superfamily, which are distantly related to GPCRs.
Statistics
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PSSM-Id: 404791
Aligned: 34 rows
Threshold Bit Score: 507.225
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6AXF6        184 SQPQ-YFLYKFPEDVD--SVIIKVVSEKAYpCSVVSVQNIMCPVYD--LDHNVEFNGVYQSMTKKAAITLQKKDFPDEQF 258 house mouse
Q9GYF0        151 SEPV-YLRYDIPGDVD--SVAVHLDSNSTI-CMTVSVQKIGCPVFD--LPDNVNSMGLHQTMTTSATIPVEKS--RMSSF 222 Caenorhabditis...
13_pfamImport   1 VKPLgYFLDAKEQNVN--AFHITVTSDDDI-CANLITVPADEPLYDrrVDLDKVDNRRILSFTRRADVLFPNSEIANFEK 77 
Q9GZC8        197 VKPIgFFLNCSEQNIS--QFHVTLYSEDDI-CANLITVPANESIYDrsVISDKTHNRRVLSFTKRADIFFTETEISMFKS 273 Caenorhabditis...
EGT42616      204 VKPIgFFLDAIEQNVK--SFHITLLSDDDF-CASLITVPANESIYDrpVDADKADNNRVITFTKRADIFFSQTEIETFKS 280 Caenorhabditis...
XP_003113953  200 VKPMgFFLDAKEQDVK--SFHITVTSEDDI-CANVITVPANESIYDrpVDSDKADNQRVITFNRRADIFFSEKEIELFKS 276 Caenorhabditis...
CAP28349      192 VKPIgFFLDTEEQIVK--SFHITLTSADDI-CANVITAPANESIYErpVDSDRADNRRVLTFTRRADIFFSETEIQLFKT 268 Caenorhabditis...
EFO97233      116 G-------YTFPDYVE--KVNVRITSDSDV-CAKIYARKANCPAFDasGLVELSDSSYYQSFTTFGGFSLRKSDIGPK-F 184 Caenorhabditis...
XP_008186416  173 SEPV-YYYYSFKQNAS--MVLLHVISDDVM-CMTLSIQNSSCPVFD--SLETVQYDGLRQTVSKTGGIIISKDEYPLG-L 245 pea aphid
EEB18039      163 STPY-FYLYEFQSE-EvnSILLHVTSDDDT-CMIVSIQNVSCPIFD--LEENVQYRGHFQTITRQGGLTLTRDAFPNG-F 236 human body louse
Q6AXF6        259 FVVFV-IKPEDYACGGSfsiqeNENQTWNLQRSKNLkVTIVPSIKESV-YVKSSLFSIFVFLSFYLGCLLVVLVHhvrfq 336 house mouse
Q9GYF0        223 YVVFV-VNTNDDLCSEIls-ikPNKPTKFPLRMKSFnVTIESSMKIFD-YTIPIVFWACILLLVTIVVFVYHYFDgiw-- 297 Caenorhabditis...
13_pfamImport  78 FRIFVlISPDDSLCGA--------SSRKTALQNKKLsLEFVKLNDAS--YSVPLIAMFTFLAIPALIFLPFVTLT----- 142
Q9GZC8        274 FRIFVfIAPDDSGCST-------NTSRKSFNEKKKIsFEFKKLENQS--YAVPTALMMIFLTTPCLLFLPIVI-N----- 338 Caenorhabditis...
EGT42616      281 FRIFVfISPVDSPCST-------NSSRKTFNENKKVtFEFAKLEPSS--YFFPTALMMAFLATPVLLFVPALILN----- 346 Caenorhabditis...
XP_003113953  277 FRIFVfVSPVDSPCSL-------KTSRKTFNEQKKMtFEFKKLEPDS--YFMPTLAMIAFFISPCLIVASILAVN----- 342 Caenorhabditis...
CAP28349      269 FRIFVfISPVNAPCSG-------NTSRKNYNEIKKItFDFTRLEPNS--YFVPTLAMLVFFASPCLIFIASLTVN----- 334 Caenorhabditis...
EFO97233      185 HLAFT-VEPDDVVCETY------TNLTENPYRVKNVnISVIPIFDETVqPIVPVVLYISVSFAVIVMTYFQCKW------ 251 Caenorhabditis...
XP_008186416  246 FIVFV-VHSDNSACNR-------GNYQATNSRTKSIsFVVKPTV---D-FNYQIINCLIVTFIFISILVLTTFFYhakrd 313 pea aphid
EEB18039      237 YIVLI-VTGEDNYCFS-------KFLGNEYDRTKSVtVQLSKSISSSD-YKIAVLLTLLVLSLFCTLMFTVFYYNynkek 307 human body louse
Q6AXF6        337 rksidgsfgssdgsgnmavshpitastpegsnygaI-DEsssSPGRQMSSSDGGQPCH--------SDTDSSV-EESDFD 406 house mouse
Q9GYF0        298 --------------------------------errFvSRaytHLEDNAQEQRIRDFYD--------FQRMSEDdDLKDYD 337 Caenorhabditis...
13_pfamImport 143 -----------------------------------RfRS---MPIATDHLLDLST----------------DLsSSSQPS 168
Q9GZC8        339 -----------------------------------IiKNsrkLAPSQSNLISFSPVPS--------EQRDMDLsHDEQQN 375 Caenorhabditis...
EGT42616      347 -----------------------------------RiRN---TSTSQSTLISFAP--------------------DTPDQ 368 Caenorhabditis...
XP_003113953  343 -----------------------------------VwRNr-dPSNTSADLVSFES--------------------DEPNH 366 Caenorhabditis...
CAP28349      335 -----------------------------------ViRN---RSDLVADLISFSS--------------------DQSAN 356 Caenorhabditis...
EFO97233      252 ----------------------------------------------------------------------LNRnENNEPN 261 Caenorhabditis...
XP_008186416  314 -------------------------------nlktI-DItqeEPSTSICSTPVNIQPD--------NVSYDSSlDETDID 353 pea aphid
EEB18039      308 nfi------------------------pddcfiesEnEVsasVSNAVLPALSPSSPGPfivgtdtlSIKTDSSlDETDYD 363 human body louse
Q6AXF6        407 TMPDIESDKNVIRTKMFLYL---SDLS----RKDRRIVSKKYKIYFWNIITI---------------AVFYALPVMQ--- 461 house mouse
Q9GYF0        338 LLTDCQ-DMMVVRAKASLTV---ADLS----MTPYEERELKYDVYKIALAII---------------GIFYNITVLQ--- 391 Caenorhabditis...
13_pfamImport 169 PLIVLDES----ATDNSLGI---AEVN----A----------------DITVledvkltdslslhgeMLRYPVAIIL--- 218
Q9GZC8        376 TSSELENNGEIPAAENQIV----EEIT----AENQETSVEEGNREIQVKIPLkqdsl-----slhgqMLQYPVAIIL--- 439 Caenorhabditis...
EGT42616      369 SYQVEE----GPSTDNDIVVpeeEN------LQNQEGN----------IIPLpedsl-----slhgqMLKYPLAIIL--- 420 Caenorhabditis...
XP_003113953  367 PNANTS--------DEQLVVmeeEEVN----LQNHENLQNHVE-----AVSVkqdsl-----slhgqVLRYPIAIIL--- 421 Caenorhabditis...
CAP28349      357 TSAIAENN----MAHNEIAVipeEE-N----LQVQEIE----------PIPIkqdsl-----slhgqMFKYPVALIL--- 409 Caenorhabditis...
EFO97233      262 SQQEIDSENSLVVDKIILFDkpaNIVSynkyHKNKLINESKYFNFLLFQFIT---------------TIILSVPVLQqlk 326 Caenorhabditis...
XP_008186416  354 ILKSPEPWKDLIRTKACLYV---SDLS----KKDHRILKAKSSLYVWNLITV---------------AVFYSLPVIQ--- 408 pea aphid
EEB18039      364 NVSDVEFDKDIFRLKGYMYL---CDLA----RKNQSVLKKKSEMYLWNLLTV---------------AIFYFLPVLQ--- 418 human body louse
Q6AXF6        462 LVITYQTV------VNVTGNQD-ICYYNFLCAHPLGV----LSAFNNILSNLGHVLLGFLFLLIVLRRDLlhrrALEAKD 530 house mouse
Q9GYF0        392 LIISKAGS------LRQSGDLD-ECTFNFQCARPLWY----FVAFNNVVSNGGYVYFGTLIIVMNYCRERsfrrLFAVQP 460 Caenorhabditis...
13_pfamImport 219 PVLMHTAVeyhnwsKSSMANRDeMCFYNHACANPYGE----FRAWNNIISNIGYAIYGLAFVAITVGRRR--------RS 286
Q9GZC8        440 PVLMHTAIefhkwtTSTMANRDeMCFHNHACARPLGE----LRAWNNIITNIGYTLYGAIFIVLSICRRG--------RH 507 Caenorhabditis...
EGT42616      421 PVFMHTAVeyhewtTSTMANRDeMCFHNNACARPYGE----LRAWNNIISNIGYAIYGLVFIAITMCRRW---------R 487 Caenorhabditis...
XP_003113953  422 PVLMHTAVqfhnftFSTMANRDeMCFHNSACSKPLGE----LRAWNNMISNIGYAIYGFVFILITMFRRW---------R 488 Caenorhabditis...
CAP28349      410 PVLMHTGVefhnftTSTMANRDeMCFHNNACAKPLGE----LRSWNNMISNIGYAIYGLVFIMVTMCRRW---------R 476 Caenorhabditis...
EFO97233      327 SIFPNENT------LTKNVNLD-NCYLNYLCSSSVFG----FNCFNGMISSNSMVVVGVVNLFIVFRKKI----FGYKSP 391 Caenorhabditis...
XP_008186416  409 LVFTSQKM------LIETGNQD-LCYYNFLCSHSFVLgpwkFSDFNHIFSNIGYIFFGLLFILITYKREC--------VN 473 pea aphid
EEB18039      419 LVITNQYQ------VNETGEED-LCYYNFLCAHPFLF----FSDFNHVFSNIGYLLFGSLFIFITAMKERlykiKIFSNK 487 human body louse
Q6AXF6        531 IFAMEYGIPKHFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYSAYASFAV 610 house mouse
Q9GYF0        461 TLAERYGLPQHSGLMTAIGLAVIMEGISSATYHVCPNNINYQFDTALMYVIGMLGKLKIWSLRHPDMVVSAYHAFGFLGV 540 Caenorhabditis...
13_pfamImport 287 RQLVGYGVHESTLIDVTIGVFMVLQAIASATYHICPSNVSFQFDTPCIQMICCLLIIRQWLVRLESPSA-AYSNLLLVVV 365
Q9GZC8        508 EYSHVFGTYECTLLDVTIGVFMVLQSIASATYHICPSDVAFQFDTPCIQVICGLLMVRQWFVRHESPSP-AYTNILLVGV 586 Caenorhabditis...
EGT42616      488 HGSPVVGIYECTLLDVTIGVFMILQAIASATYHICPSDVAFQFDTPCIQVICGLLIIRQWRVRQESPSA-SYTNLLLFGV 566 Caenorhabditis...
XP_003113953  489 HHSALVGTYECTLLDITIGVFMILQAIASATYHICPSDIAFQFDTPCIQVICGLLIIRQWLVRKESPSP-AYTNMLLLAV 567 Caenorhabditis...
CAP28349      477 HHSPLVGTYECTLLDITIGLFMILQAIASATYHICPSDIAFQFDTPCIQVICGLLIIRQWLVRQESPSP-AYTNILLFCV 555 Caenorhabditis...
EFO97233      392 KPPTAHGVQKQDAAKVVTLLGMFAMGLFWTLISNCPHKSSLHFYTYTHSWTFISAFMWLHAKRH---GTHVWQHFFIIAL 468 Caenorhabditis...
XP_008186416  474 IPNQKFGIPNHCGLYYAMGSALAMEGLMSACYHVCPNHSNFQFDTSFMYIICMLSMIKIYQTRHPDINANAYLVFGVLAF 553 pea aphid
EEB18039      488 KLYRFYGIPQHFGLFYAMGAALIIEGILSACYHICPNHYNFQFDSSFMYVISTLCMIKIYQTRHPDINATAYSTFFSLAG 567 human body louse
Q6AXF6        611 VITLTVLGVVF-----GKNdvWFW---IIFSAIHILSSLALSTQIYYMGRFKI-DLGIFRRAAMVFYTDCIQQ----CSR 677 house mouse
Q9GYF0        541 FLMAAIAGVYV-----HNM--IFW---ALFSIIYIASMLLVSLEFYFKGIWTLnLRELRNSIRLSWVSSRHLS----CVV 606 Caenorhabditis...
13_pfamImport 366 VSVNFLVSALS----------KTWyirYLIAGIHMFIISSICLA------------------------------------ 399
Q9GZC8        587 VSLNFLISAFS----------KTSyvrFIIAVIHVIVVGSICLA------------------------------------ 620 Caenorhabditis...
EGT42616      567 VSLNFLISAFS----------KAKyvrYLIAMIHISAIASMCLA------------------------------------ 600 Caenorhabditis...
XP_003113953  568 VSLNFLISTLS----------KSSrvrYVIATIHFIVVATICLK------------------------------------ 601 Caenorhabditis...
CAP28349      556 VSLNFLISACS----------KASgirYLIAIIHFGVVATVCLA------------------------------------ 589 Caenorhabditis...
EFO97233      469 FSVYGCLSFLEyayemTSNyvAFLfknILFVFVCVSSTVFIAFNYVYerpsglqk--hqwisspLRKKEIIQCdeneIYR 546 Caenorhabditis...
XP_008186416  554 VIILGLTGIMY-----EGP--ILF---ILFTCLHLIMIFWLSAQIYYMGRWKL-DKKTPKRFLNHLMTAp------nPCK 616 pea aphid
EEB18039      568 VIFIGMCGVFN-----NTP--TFW---ILFTILHLSICAYISLQIYYMGRWKL-GNISFCQFFKELRLCFYCHw--gYFK 634 human body louse
Q6AXF6        678 PLYMDRM--------------VLLIVGNLVNWSFAFFGLIYRP---RDFASYMLGIFICNLLLYLAFYIIMKLR----SS 736 house mouse
Q9GYF0        607 PAYKARF--------------FVILLLNIANTAVVVYGLEAHP---KDFLSFLLIPFIGNLFIYIIYYILMKMI----YR 665 Caenorhabditis...
13_pfamImport 400 ---KKRMlginesafrkqislTFIIYYSICNITMLLVYLVSAKihlNQIVTYC---CIFNCIMYLIYYALIKYM----CH 469
Q9GZC8        621 ---KERSlgsek-----lktrFFIMAFSMGNFAAIVMYLTLSAfhlNQIATYC---FIINCIMYLMYYGCMKVL----HS 685 Caenorhabditis...
EGT42616      601 ---KRRTletk------ktfqVFTACFAAINFLIMLTYLAPSIlhlNQIVTYC---FISNCIMYLVYYAVMKLV----SR 664 Caenorhabditis...
XP_003113953  602 ---KQKKmgsr------kdaaKFMIFFAVANFILMMMYLTSSKihlNQITTYC---FILNCIVYLTYYATMKAV----SR 665 Caenorhabditis...
CAP28349      590 ---KRKTlrsk------qvykVFVGTFAIFNFFAITIYVTSSYihlNQISTYC---FILNCILYLTYYALMKFA----SR 653 Caenorhabditis...
EFO97233      547 PL-PSKK--------------VFAVGLILLSVGWSVFSFYPDD---ISVTKCIFCLEQCQVGFYLVYYVVQKIRfersTF 608 Caenorhabditis...
XP_008186416  617 PKYPNRM--------------VLLSIGILINLGLAISHWIIKF---GNFGNYLLILFMVNLILYLSFYIVMKLI----SK 675 pea aphid
EEB18039      635 PLFPSRC--------------LLLIVANGCNWGLAIGRFFYKI---ENFSSYLLSIFMVNLMLYTLFYIIMKFI----CK 693 human body louse
Q6AXF6        737 EKVLPLPVFCIAATAVVWAAALYFFFQNLSSWEG--TPAESREKNRECVLLDFFDDHDIWHFLSATALFFSFLVLLTLDD 814 house mouse
Q9GYF0        666 EKIPKRAIALLFAAVISWTCAGILFNQRVSDWSK--MPAISRELNKPCIFLNFYDNHDLWHLSSAFAIFFSFTAINVIDD 743 Caenorhabditis...
13_pfamImport 470 ERISHLAKLYGSLALVGWFVSAWFFFQDDMDWTQ--SAAVSRSLNKPCVLLQFFGSHDLWHIFGAMAGLFTFLFVSYVDD 547
Q9GZC8        686 ERITSKAKLCGALSLLAWAVAGFFFFQDDTDWTR--SAAASRALNKPCLLLGFFGSHDLWHIFGALAGLFTFIFVSFVDD 763 Caenorhabditis...
EGT42616      665 ERIGLKGKVCGGLAVIGWIVAAVFFFQDDTDWTR--SSAASRALNKPCLLLNFFGSHDLWHIFGALAGLFTFLFVSFVDD 742 Caenorhabditis...
XP_003113953  666 ESIGLKAKICGTLAIVGWITAGYFFFQDDTDWTR--TAAASRALNKPCLLLDFFGSHDLWHIFGALAALFTFFSVSFVDD 743 Caenorhabditis...
CAP28349      654 ESIELKAKVCGVSAIFGWLIAGFFFFQDDTDWTR--TAAMSRALNTPCLLLDFFGSHDLWHMFGAIAGLFTFLFVSFVDD 731 Caenorhabditis...
EFO97233      609 NRKFVLTLVLIILTSIPVIIFYLIIINYESPWYLlwTPAKSRTLNRECITPGI-DWADMDYYMTSAIFILFIIFMDFIDS 687 Caenorhabditis...
XP_008186416  676 EKLHFWPLLYILLAMIFWSASLYFYMHKSSSWTL--SAAQSRTYNTPCTFMDFYDNHDIWHFLSAISLYLSFMVLFTLDD 753 pea aphid
EEB18039      694 ERLLPQSIFYILVSVLGWTFALYFFFSKTTSWRL--TPAESRLYNQPCQLLNFYDNHDIWHFISAASMFFSFMVLLTLDD 771 human body louse
Q6AXF6        815 DLDVVRRDQIPVF 827 house mouse
Q9GYF0        744 DLMFVMRNTIRVF 756 Caenorhabditis elegans
13_pfamImport 548 DLLNIPKCSVTVF 560
Q9GZC8        764 DLINTRKTSINIF 776 Caenorhabditis elegans
EGT42616      743 DLVNTPKSAINVY 755 Caenorhabditis brenneri
XP_003113953  744 DLVNTPKSSINIF 756 Caenorhabditis remanei
CAP28349      732 DLINTPKSSINMY 744 Caenorhabditis briggsae
EFO97233      688 NVKHIPKKHIFVF 700 Caenorhabditis remanei
XP_008186416  754 DVINKPTATIPVF 766 pea aphid
EEB18039      772 DITYADRSKILVF 784 human body louse
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