6I3M,7D46,6QG3,6JLY,6QG2,1T5O,2YRF


Conserved Protein Domain Family
IF-2B

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pfam01008: IF-2B 
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Initiation factor 2 subunit family
This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft.
Statistics
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PSSM-Id: 395798
Aligned: 18 rows
Threshold Bit Score: 169.782
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6I3M_B  15 EEDTEMTMPIAAIEALVTLLRIKTpetaa---------eminTIKSSTEELIKSIPNSVSLRAGCDIFMRfvlrnlhl-- 83  Saccharomyces cerevis...
Q5V075 195 RTHGSAWLSLRALEVLRDEAALADagrsddletaerdgddweALAALAAEIREARPSMVVIANRLDRAMAavt------- 267 Haloarcula marismortui
7D46_B  15 KEDPDMASAVAAIRTLLEFLKRDKgetiq---------glraNLTSAIETLCGVD-SSVAVSSGGELFLRfislasle-- 82  human
P34604  15 ENDPSKSTSLATVETLLEVLDRSRattva---------efqnELNQVVAALEKTDYSSTSIRSAADLFTRftslapaall 85  Caenorhabditis elegans
Q61749 219 LISGSNARCIALLHALQQVIQDYTtppseel-----srdlvnKLKPYISFLTQCRPMSASMCNAIKFLTKevtgmss--- 290 house mouse
6QG3_G 285 KIVGSIPRCIAMLEVFQIVIKDYQtpkgttl-----srnltsYLSHQIDLLKKARPLSVTMGNAIRWLKQeislidp--- 356 Saccharomyces cerevis...
6JLY_H 156 KIFGSNQRCIDLLKTFKIVIQDYQtpygttl-----srhlttHINSQIAYLVSTRPLSISMGNAIRFLKLeisvldi--- 227 Schizosaccharomyces p...
6QG2_D  33 QVQGSYAIALETLQLLMRFISAARwnhvn---------dlieQIRDLGNSLEKAHPTAFSCGNVIRRILAvlrdeveedt 103 Saccharomyces cerevis...
P74497  51 VVRGAPAIGVAAAYGMYLGARRIQttelr---------efvvQLEFVADQLRQTRPTAVNLFWAIDQMLNvayhsg---- 117 Synechocystis sp. PCC...
2YRF_A  70 KVRGAPAIGITAAFGLALAAKDIEtdnvt---------efrrRLEDIKQYLNSSRPTAINLSWALERLSHsvenai---- 136 Bacillus subtilis
6I3M_B  84 -ygdwencKQH---------------------------------------LIENGQLFVSR-AKKSRNKIAEIGVDFI-- 120 Saccharomyces cerevis...
Q5V075 268 -----desPAA---------------------------------------VERAATEALNH-AVTADRVAAAVAAEHV-- 300 Haloarcula marismortui
7D46_B  83 -ysdyskcKKI---------------------------------------MIERGELFLRR-ISLSRNKIADLCHTFI-- 119 human
P34604  86 dqedfsqvLDL---------------------------------------YRQRARSFIKN-VRGSRAKISKCARLFF-- 123 Caenorhabditis elegans
Q61749 291 -skreeeaKSE---------------------------------------LREALDRYVQEkIVLAAQAISRFASTKI-- 328 house mouse
6QG3_G 357 -stpdkaaKKD---------------------------------------LCEKIGQFAKEkIELADQLIIDNASTQI-- 394 Saccharomyces cerevis...
6JLY_H 228 -dltddegKEL---------------------------------------LLEKIDSYIRDrIIIAGQVIVQAATEKI-- 265 Schizosaccharomyces p...
6QG2_D 104 msttvtstSVAeplissmfnllqkpeqphqnrknssgsssmktktdyrqvAIQGIKDLIDE-IKNIDEGIQQIAIDLI-- 180 Saccharomyces cerevis...
P74497 118 --enveqiKAN---------------------------------------LLSQAQQIQLD-DLRTCQAIGAAGLEVLpr 155 Synechocystis sp. PCC...
2YRF_A 137 ---svneaKTN---------------------------------------LVHEAIQIQVE-DEETCRLIGQNALQLF-- 171 Bacillus subtilis
6I3M_B 121 -ADDDIILVHG-YSRA--------VFSLLNH-AANKFIRFRCVVTESRP-SKQG-NQLYTLLEQKGIPVTLIVDSAVGAV 187 Saccharomyces cerevis...
Q5V075 301 ---GDRIATLS-RSGT--------VRAVAAA-AAPEA----VLVAESRP-GGEG--VGVAETLAESTAVTLTTDAAFGHE 360 Haloarcula marismortui
7D46_B 120 -KDGATILTHA-YSRV--------VLRVLEA-AVAAKKRFSVYVTESQP-DLSG-KKMAKALCHLNVPVTVVLDAAVGYI 186 human
P34604 124 -THHMNILTHS-YSKV--------VLETILD-AHKSGYHLHVWVTESQP-DASG-KLVFEELKKNGVPTTLVLDSCVGYV 190 Caenorhabditis elegans
Q61749 329 -SDGDVILVYG-CSSL--------VSRILQE-ARVEGRRFRVVVVDSRP-RLEG-RHMLHSLVRAGVPTSYLLIPAASYV 395 house mouse
6QG3_G 395 -EESTTIVTYG-SSKV--------LTELLLHnAISLKKNIKVIVVDSRP-LFEG-RKMAETLRNAGVNVMYALITSLDTI 462 Saccharomyces cerevis...
6JLY_H 266 -QDGDVILTYL-HSST--------VNDVLIH-AKNVGKKFRVVVVDSRP-EFEG-RVCLKLLTEHGIECTYVMISALSYI 332 Schizosaccharomyces p...
6QG2_D 181 -HDHEILLTPTpDSKT--------VLKFLITaRERSNRTFTVLVTEGFPnNTKNaHEFAKKLAQHNIETLVVPDSAVFAL 251 Saccharomyces cerevis...
P74497 156 ePHQLTILTHC-NAGAlatagygtAIGVIRA-AWSAGRLARVYADETRP-RLQGaKLTVWECVQAGIPVTLITDNMAAHC 232 Synechocystis sp. PCC...
2YRF_A 172 -KKGDRIMTIC-NAGSiatsrygtALAPFYL-AKQKDLGLHIYACETRP-VLQGsRLTAWELMQGGIDVTLITDSMAAHT 247 Bacillus subtilis
6I3M_B 188 IDK--VDKVFVGAEGVAESGg-IINLVGTYSVGVLAHNARKPFYVVTESHKFVRMfPLSSDDLPMAGPPLDFTRRTDDL- 263 Saccharomyces cerevis...
Q5V075 361 LDAwsADTLVVGADRILPDGc-VVNKVGTRSAALSAAAADVDCYAVCATDKIAPRaAWDR----EERDAQEVYAGAA--- 432 Haloarcula marismortui
7D46_B 187 MEK--ADLVIVGAEGVVENGg-IINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLfPLNQQDV-----PDKFKYKADTLk 258 human
P34604 191 MER--IQAVLVGAEGVMETGg-IINKIGTVNVCIIAKSRHVPVYVCAETIKFVREfPLNQADI-----PQEFKYRTSVIe 262 Caenorhabditis elegans
Q61749 396 LPE--VSKVLLGAHALLANGs-VMSRVGTAQLALVARAHNVPVLVCCETYKFCERvQTDAFVSNELDDPDDLQCKRGDQv 472 house mouse
6QG3_G 463 FNMd-VDYVFLGAHSILSNGf-LYSRAGTAMLAMSAKRRNIPVLVCCESLKFSQRvQLDSVTFNELADPNDLVNIDYENp 540 Saccharomyces cerevis...
6JLY_H 333 MQE--VTKIFLGGHAMLSNGa-LYSRAGTSLISLLGHESNVPVIACCESYKFTERiQLDSLVYNELAPGDQLVNMGVDDf 409 Schizosaccharomyces p...
6QG2_D 252 MSR--VGKVIIGTKAVFVNGgtISSNSGVSSVCECAREFRTPVFAVAGLYKLSPLyPFDVEKFVEFGGSQRILPRMDPRk 329 Saccharomyces cerevis...
P74497 233 MQQqrIDAVVVGADRIARNGd-IANKIGTYGLAVLAKMHAIPFFVAAPLSTVDFAlDDGSQIPIEERDPVEIYQPEGNRi 311 Synechocystis sp. PCC...
2YRF_A 248 MKEkqISAVIVGADRIAKNGd-TANKIGTYGLAILANAFDIPFFVAAPLSTFDTKvKCGADIPIEERDPEEVRQISGVRt 326 Bacillus subtilis
6I3M_B 264 --------------------------------------------------------------------EDALRGPTIDYT 275 Saccharomyces cerevis...
Q5V075 433 --------------------------------------------------------------------DIAVSNPTFDIT 444 Haloarcula marismortui
7D46_B 259 vaq--------------------------------------------------------------tgqDLKEEHPWVDYT 276 human
P34604 263 r------------------------------------------------------------------nNLELEHPDVDYT 276 Caenorhabditis elegans
Q61749 473 alan-----------------------------------------------------------wqshpSLRLLNLVYDVT 493 house mouse
6QG3_G 541 verrgnkgallnqfikerkfekkklamenkpkgnkiggkkgsegeskdasneedsnsknildgwqelpSLNIVNILYDLT 620 Saccharomyces cerevis...
6JLY_H 410 eekpgvl------------------------------------------------------anwksvkNLKLLSLKYDVT 435 Schizosaccharomyces p...
6QG2_D 330 --------------------------------------------------------------------RLDTVNQITDYV 341 Saccharomyces cerevis...
P74497 312 t-----------------------------------------------------------------peGAEFYNPAFDVT 326 Synechocystis sp. PCC...
2YRF_A 327 a-----------------------------------------------------------------psNVPVFNPAFDIT 341 Bacillus subtilis
6I3M_B 276 AQEYITALITDLGVLTP 292 Saccharomyces cerevisiae S288C
Q5V075 445 PASAVT-VVTERGVLET 460 Haloarcula marismortui
7D46_B 277 APSLITLLFTDLGVLTP 293 human
P34604 277 APEFLTLIITDVGAMKP 293 Caenorhabditis elegans
Q61749 494 PPELVDLVITELGMIPC 510 house mouse
6QG3_G 621 PPEYIKKVITEFGALPP 637 Saccharomyces cerevisiae S288C
6JLY_H 436 PPRLITVCVCEMGLLPS 452 Schizosaccharomyces pombe 972h-
6QG2_D 342 PPENIDIYITNVGGFNP 358 Saccharomyces cerevisiae S288C
P74497 327 PASLITAIITEQGAIAP 343 Synechocystis sp. PCC 6803 substr. Kazusa
2YRF_A 342 PHDLISGIITEKGIMTG 358 Bacillus subtilis
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