GEO DataSets

(Submitter supplied) see manufacturer's web site This is identical to GPL6246 but a custom cdf environment was used to extract data. ANNOTATION: chip library files are provided as supplementary files below, and can be downloaded at: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp as Package name mogene10stv1mmentrezg. vers13 july 6 2010.

Organism:

Mus musculus

3 DataSets

14 Series

1 Related Platform

125 Samples

Download data: CDF, TXT

(Submitter supplied) See manufacturer's web site This is identical to GPL6246 but a custom cdf environment was used to extract data. ANNOTATION: chip library files are provided as supplementary files below, and can be downloaded at: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp as Package name MoGene10stv1_Mm_REFSEQ version 14.

Organism:

Mus musculus

1 DataSet

1 Series

1 Related Platform

6 Samples

Download data

(Submitter supplied) This is identical to GPL6246 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below.

Organism:

Mus musculus

1 DataSet

1 Series

1 Related Platform

4 Samples

Download data: CDF

(Submitter supplied) This is identical to GPL6246 but a custom cdf environment was used to extract data.

Organism:

Mus musculus

1 Series

1 Related Platform

6 Samples

Download data: CDF, TXT

(Submitter supplied) This is identical to GPL6246 but a custom cdf environment was used to extract data. The cdf can be found at the link below.

Organism:

Mus musculus

1 Series

1 Related Platform

8 Samples

Download data: CDF, TXT

(Submitter supplied) This is identical to GPL6246 but a custom cdf environment was used to extract data. The cdf can be found at the link below.

Organism:

Mus musculus

4 Series

1 Related Platform

23 Samples

Download data: CDF, TAB, TXT

(Submitter supplied) This Platform is identical to GPL6246 but a custom cdf environment was used to extract data. The custom CDF and annotation file (transcript level probe sets, Ensembl 75 based) are linked below as a supplementary file. Protocol: See manufacturer's web site

Organism:

Mus musculus

1 Series

1 Related Platform

12 Samples

Download data: CDF, TXT

(Submitter supplied) This is identical to GPL6246 but a custom cdf environment was used to extract data. The CDF is available here: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/19.0.0/ensg.asp

Organism:

Mus musculus

4 Series

1 Related Platform

244 Samples

Download data: CDF, TXT

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/14.1.0/refseq.asp Protocol: See manufacturer's web site

Organism:

Mus musculus

2 Series

1 Related Platform

6 Samples

Download data

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 07, 2012: annotation table updated with netaffx build 32 Protocol: See manufacturer's web site

Organism:

Mus musculus

1 Series

1 Related Platform

18 Samples

Download data

(Submitter supplied) This is identical to GPL6246 but a custom cdf environment was used to extract data. The CDF is available here: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/18.0.0/ensg.asp

Organism:

Mus musculus

1 Series

1 Related Platform

6 Samples

Download data: CDF, TXT

(Submitter supplied) CDF: MoGene10stv1_Mm_ENTREZG_16.0.0 Protocol: This is identical to GPL6246 but a custom cdf environment was used to extract data. The cdf can be found at the link below.

Organism:

Mus musculus

6 Series

1 Related Platform

302 Samples

Download data: CDF, TXT

(Submitter supplied) The probes were mapped to GENE LOCi by the CDF built by GATExplorer v3.0 http://bioinfow.dep.usal.es/xgate/mapping/mapping.php The CDF file is designed to install as 'R' package; genemappermousegene1.0cdf_3.0.tar' available at: http://bioinfow.dep.usal.es/xgate/mapping/mapping.php?content=rprogram Protocol: See manufacturer's web site

Organism:

Mus musculus

3 Series

1 Related Platform

34 Samples

Download data: TAR, TXT

(Submitter supplied) This is identical to GPL6246 but a custom cdf environment was used to extract data. The cdf can be found at the link below.

Organism:

Mus musculus

3 Series

1 Related Platform

42 Samples

Download data: CDF, TXT

(Submitter supplied) This is identical to GPL6246 but a custom cdf environment was used to extract data. The cdf can be found at the link below.

Organism:

Mus musculus

2 Series

1 Related Platform

25 Samples

Download data: CDF, TXT

(Submitter supplied) Identical to GPL6246 but gene annotations are based on Ensembl version 60 (Nov 2010).

Organism:

Mus musculus

1 Series

1 Related Platform

4 Samples

Download data

(Submitter supplied) This is identical to GPL6246 but a custom cdf environment was used to extract data. The cdf can be found at the link below.

Organism:

Mus musculus

8 Series

1 Related Platform

61 Samples

Download data: CDF, TXT

(Submitter supplied) This is identical to GPL6246 but a custom cdf environment was used to extract data. The custom CDF file is based on Ensembl genes (from http://brainarray.mbni.med.umich.edu version 15). The custom cdf is linked below as a supplementary file.

Organism:

Mus musculus

3 Series

1 Related Platform

24 Samples

Download data: CDF, TXT

(Submitter supplied) This Platform is identical to GPL6246, but a custom CDF environment was used to extract data. The CDF and other chip library files are linked below as supplementary files. Protocol: See manufacturer's web site (www.affymetrix.com),

Organism:

Mus musculus

4 Series

1 Related Platform

20 Samples

Download data: CDF, TXT

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html #%create_date=Tue Dec 8 17:31:33 2009 PST #%chip_type=MoGene-1_0-st-v1 #%lib_set_name=MoGene-1_0-st #%lib_set_version=v1 #%genome-species=Mus musculus #%genome-version=mm9 #%genome-version-ucsc=mm9 #%genome-version-ncbi=37 #%genome-version-create_date=2007-07 #%netaffx-annotation-date=2009-11-16 #%netaffx-annotation-netaffx-build=30.1 #%netaffx-annotation-tabular-data-version=1.2 #%netaffx-annotation-tabular-format-version=1.1 #%netaffx-annotation-data-type=probe_set #%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl #%netaffx-annotation-docgen-version=1.12 Protocol: See manufacturer's web site

Organism:

Mus musculus

1 Series

1 Related Platform

16 Samples

Download data