GSM1300989[Accession] - GEO DataSets

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Items: 3

Select item 2000537991.

CytoScanHD array Data for 15 normal, 15 primary colorectal carcinomas and their 15 matched liver metastases

(Submitter supplied) We performed whole exome sequencing and copy number analysis for 15 triplets, each comprising normal colorectal tissue, primary colorectal carcinoma, and its synchronous matched liver metastasis. We analyzed the similarities and differences between primary colorectal carcinoma and matched liver metastases in regards to somatic mutations and somatic copy number alterationss (SCNAs). The genomic profiling demonstrated mutations in APC(73%), KRAS (33%), ARID1A and PIK3CA (6.7%) genes between primary colorectal and metastatic liver tumors. more...

Organism:: Homo sapiens

Type:: Genome variation profiling by SNP array; Genome variation profiling by genome tiling array

Platform:: GPL16131
45 Samples

Download data: CEL, CYCHP, TXT

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Accession:: GSE53799

ID:: 200053799

PubMed Full text in PMC Similar studies

Select item 1000161312.

[CytoScanHD_Array] Affymetrix CytoScan HD Array

(Submitter supplied) #%create_date=2011-12-01 GMT-08:00 10:25:44 #%chip_type=CytoScanHD_Array #%genome-species=Homo sapiens #%genome-version=hg19 #%genome-version-ucsc=hg19 #%genome-version-ncbi=GRCh37 #%genome-version-create_date=2009-02-00 #%dbSNP_date=2010-09-23 #%dbSNP_version=132 #%dgv-date=2010-10-00 #%dgv-version=10 #%hapmap-date=2008-01-08 #%hapmap-version=23 #%netaffx-annotation-date=2011-12-01 #%netaffx-annotation-netaffx-build=32.1 #%netaffx-annotation-tabular-format-version=1.0 #%netaffx-annotation-docgen-method=com.affymetrix.database.docgen.DocGenDriver #%netaffx-annotation-docgen-version=cluster_friendly_submission #%create_date=2011-12-01 GMT-08:00 10:25:09 #%chip_type=CytoScanHD_Array #%genome-species=Homo sapiens #%genome-version=hg19 #%genome-version-ucsc=hg19 #%genome-version-ncbi=GRCh37 #%genome-version-create_date=2009-02-00 #%dbSNP_date=2010-09-23 #%dbSNP_version=132 #%dgv-date=2010-10-00 #%dgv-version=10 #%netaffx-annotation-date=2011-12-01 #%netaffx-annotation-netaffx-build=32.1 #%netaffx-annotation-tabular-format-version=1.0 #%netaffx-annotation-docgen-method=com.affymetrix.database.docgen.DocGenDriver #%netaffx-annotation-docgen-version=cluster_friendly_submission ##This database/product contains information from the Online Mendelian Inheritance in Man(R) (OMIM(R)) database, which has been obtained under a license from the Johns Hopkins University. more...