GEO DataSets

Analysis of MG1655 cells grown up to an OD of 1.27. Cells were grown anaerobically in M9 media containing glucose. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 6 age sets

Platform:

GPL3503

Series:

GSE4375

6 Samples

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Analysis of stationary phase MG1655 cells at OD600 of 2.4, 2.8, and 3.1. Cells at OD 3.1 in LB media examined at various time points up to 60 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 3 protocol, 4 time sets

Platform:

GPL3503

Series:

GSE4380

6 Samples

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Analysis of LE234 acrD- cells treated with novobiocin at various concentrations up to 200 ug/ml for 5 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 4 dose sets

Platform:

GPL3503

Series:

GSE4378

4 Samples

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Analysis of MG1655 cells in Davis medium at various time points up to 60 minutes following treatment with gamma radiation. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 5 time sets

Platform:

GPL3503

Series:

GSE4377

5 Samples

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Analysis of W3110 cells in Bonner-Vogel medium supplemented with 50 ug/ml tryptophan at various time points up to 60 minutes following treatment with 0.01 M sodium azide. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 4 time sets

Platform:

GPL3503

Series:

GSE4372

4 Samples

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Analysis of C600 gyrA parC double mutants at various time points up to 30 minutes following treatment with 50 ug/ml norfloxacin. gyrA parC double mutants are resistant to norfloxacin. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 5 time sets

Platform:

GPL3503

Series:

GSE4369

5 Samples

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Analysis of C600 gyrA parC double mutants at various time points up to 30 minutes following treatment with 15 ug/ml norfloxacin. gyrA parC double mutants are resistant to norfloxacin. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 5 time sets

Platform:

GPL3503

Series:

GSE4368

5 Samples

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Analysis of C600 cells at various time points up to 30 minutes following treatment with 50 ug/ml norfloxacin. Norfloxacin added to cells grown in LB. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 5 time sets

Platform:

GPL3503

Series:

GSE4367

5 Samples

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Analysis of cells at various growth rates during balanced growth in chemostat. Results compared to those from cells overexpressing NOX. NOX allows cells to recycle the excess NADH during rapid growth. OD600 of 0.19 to 0.6 examined. Part of a study tracking responses to various perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 5 growth protocol sets

Platform:

GPL3503

Series:

GSE4366

5 Samples

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Analysis of NOX overexpressing MG1655 cells at various growth rates during balanced growth in chemostat cultures. Cells with NOX recycle the excess NADH generated during rapid growth. OD600 of 0.13 to 0.4 examined. Part of a study tracking responses to chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 5 growth protocol sets

Platform:

GPL3503

Series:

GSE4365

5 Samples

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Analysis of MG1655 cells grown up to an OD of 1.29. Cells were grown anaerobically in M9 media containing glucose and fumarate. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 6 age sets

Platform:

GPL3503

Series:

GSE4376

6 Samples

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Analysis of MG1655 cells at various phases of growth up to stationary phase. Cells were grown anaerobically in M9 media containing glucose and fumarate. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 6 age sets

Platform:

GPL3503

Series:

GSE4374

6 Samples

Download data

Analysis of MG1655 cells at various phases of growth up to stationary phase. Cells were grown anaerobically in M9 media with glucose. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 6 age sets

Platform:

GPL3503

Series:

GSE4373

6 Samples

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Analysis of MG1655 cells at various time points up to 90 minutes following transfer from stationary phase culture into media with 10 mM sodium phosphate and 0.2% glucose to OD of 0.4. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 7 time sets

Platform:

GPL3503

Series:

GSE4371

7 Samples

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Analysis of MG1655 cells transferred from stationary phase culture into media with 10 mM sodium phosphate. Recovering cells examined at various time points up to 90 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 7 time sets

Platform:

GPL3503

Series:

GSE4370

7 Samples

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Analysis of MG1655 cells transferred from stationary phase LB culture into fresh LB media with 0.2% glucose to OD of 1.0. Recovering cells examined at various time points up to 90 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 7 time sets

Platform:

GPL3503

Series:

GSE4364

7 Samples

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Analysis of MG1655 cells transferred from stationary phase LB culture into fresh LB media with 0.2% glucose. Recovering cells examined at various time points up to 1440 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 11 time sets

Platform:

GPL3503

Series:

GSE4363

11 Samples

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Analysis of MG1655 cells at various time points up to 75 minutes following treatment with 100 ug/ml kanamycin. Kanamycin added to cells grown in M9 media supplemented with glucose. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 6 time sets

Platform:

GPL3503

Series:

GSE4362

6 Samples

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Analysis of MG1655 cells at various time points up to 60 minutes following treatment with 15 ug/ml indole acrylate. Indole acrylate added to cells growing in Bonner-Vogel media. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 4 time sets

Platform:

GPL3503

Series:

GSE4361

4 Samples

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Analysis of MG1655 cells at various time points up to 60 minutes following treatment with 10 ug/ml indole acrylate. Indole acrylate added to cells growing in Bonner-Vogel media. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.

Organism:

Escherichia coli

Type:

Expression profiling by array, log2 ratio, 4 time sets

Platform:

GPL3503

Series:

GSE4360

4 Samples

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