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Links from GEO DataSets

Items: 20

1.

Skeletal muscle DNA methylation and mRNA responses to a bout of higher versus lower load resistance exercise in previ-ously trained men

(Submitter supplied) We sought to determine the skeletal muscle genome-wide DNA methylation and mRNA respons-es to one bout of lower-load (LL) versus higher-load (HL) resistance exercise. Trained col-lege-aged males (n=11, 23±4 years old, 4±3 years self-reported training) performed LL or HL bouts to failure separated by one week. The HL bout (i.e., 80 Fail) consisted of four sets of back squats and four sets of leg extensions to failure using 80% of participants estimated one-repetition maximum (i.e., est. more...
Organism:
Homo sapiens
Type:
Methylation profiling by genome tiling array
Platform:
GPL21145
64 Samples
Download data: CSV, IDAT, PDF
Series
Accession:
GSE220928
ID:
200220928
2.

Genome-wide DNA methylation and mRNA responses to a bout of higher versus lower load resistance training in previously trained men

(Submitter supplied) We sought to determine skeletal muscle genome-wide DNA methylation and transcriptome changes to one bout of lower-load (LL) versus higher-load (HL) resistance exercise. Previously trained college-aged males (n=11, age: 23±4 years old, training experience: 4 ± 3 years) performed LL or HL bouts to failure separated by one week. The HL bout (a.k.a., 80 Fail) consisted of four sets of back squats and four sets of leg extensions to failure using 80% of their estimated one-repetition maximum (i.e., est. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL24324
64 Samples
Download data: CEL
Series
Accession:
GSE220899
ID:
200220899
3.

Human Muscle Posses Epigenetic Memory

(Submitter supplied) It is unknown if adult human skeletal muscle has an epigenetic memory of earlier encounters with growth. We report, for the first time in humans, genome-wide DNA methylation (850,000CpGs) and gene expression analysis after muscle hypertrophy (loading), return of muscle mass to baseline (unloading), followed by later hypertrophy (reloading). We discovered increased frequency of hypomethylation across the genome after reloading (18,816 CpGs) versus earlier loading (9,153 CpG sites). more...
Organism:
Homo sapiens
Type:
Methylation profiling by genome tiling array
Platform:
GPL21145
40 Samples
Download data: IDAT
Series
Accession:
GSE114763
ID:
200114763
4.

Multi-Omic Integrated networks connect DNA methylation and miRNA with skeletal muscle plasticity to chronic exercise in type 2 diabetic obesity [Methylation data]

(Submitter supplied) Analysis of skeletal muscle DNA methylation from type 2 diabetic volunteers before and after 16 weeks of chronic exercise training (two groups, one undergoing aerobic excercise and the other resistance training exercise)
Organism:
Homo sapiens
Type:
Methylation profiling by array
Platform:
GPL13534
34 Samples
Download data: TXT
Series
Accession:
GSE58280
ID:
200058280
5.

Multi-Omic Integrated networks connect DNA methylation and miRNA with skeletal muscle plasticity to chronic exercise in type 2 diabetic obesity

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
synthetic construct; Homo sapiens
Type:
Non-coding RNA profiling by array; Expression profiling by array; Methylation profiling by array
Platforms:
GPL13534 GPL14613 GPL10558
102 Samples
Download data: CEL, CHP
Series
Accession:
GSE58250
ID:
200058250
6.

Multi-Omic Integrated networks connect DNA methylation and miRNA with skeletal muscle plasticity to chronic exercise in type 2 diabetic obesity [mRNA data]

(Submitter supplied) Analysis of skeletal muscle gene expression from type 2 diabetic volunteers before and after 16 weeks of chronic exercise training (two groups, one undergoing aerobic ecercise and the other resistance training exercise)
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL10558
34 Samples
Download data: TXT
Series
Accession:
GSE58249
ID:
200058249
7.

Multi-Omic Integrated networks connect DNA methylation and miRNA with skeletal muscle plasticity to chronic exercise in type 2 diabetic obesity [miRNA data]

(Submitter supplied) Analysis of skeletal muscle miRNA expression from type 2 diabetic volunteers before and after 16 weeks of chronic exercise training (two groups, one undergoing aerobic ecercise and the other resistance training exercise)
Organism:
synthetic construct; Homo sapiens
Type:
Non-coding RNA profiling by array
Platform:
GPL14613
34 Samples
Download data: CEL, CHP
Series
Accession:
GSE58248
ID:
200058248
8.

Transcriptome response of human skeletal muscle to divergent exercise stimuli

(Submitter supplied) While acute aerobic and resistance exercise stimulate a number of shared genes, each exercsie mode stimlutes a number of uniquely responsive genes, thus highlighting that different forms of exercise facilitate distinct molecular responses in skeletal muscle.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL16791
29 Samples
Download data: TXT
Series
Accession:
GSE107934
ID:
200107934
9.

Aerobic Exercise Training Rejuvenates the Human Skeletal Muscle Methylome Ten years after Breast Cancer Treatment and Survival

(Submitter supplied) Many cancer survivors suffer from impairments in skeletal muscle (SkM), both in terms of reduced mass and function. Interestingly, human SkM possesses an epigenetic memory of earlier stimuli, such as exercise. Long-term retention of epigenetic changes in SkM following cancer survival and/or exercise training have not yet been studied. We therefore investigated genome-wide DNA methylation (the methylome) in SkM following a 5-month, 3/week treadmill-based aerobic training intervention in breast cancer survivors 10-14 years after diagnosis and treatment. more...
Organism:
Homo sapiens
Type:
Methylation profiling by array
Platform:
GPL21145
32 Samples
Download data: IDAT, TXT
Series
Accession:
GSE213029
ID:
200213029
10.

Transcriptional events in human skeletal muscle at the outset of concentric resistance exercise training

(Submitter supplied) We sought to ascertain the time-course of transcriptional events that occur in human skeletal muscle at the outset of resistance exercise (RE) training in RE naïve individuals, and determine if the magnitude of any response was associated with exercise induced muscle damage. Sixteen RE naïve males were recruited, 8 underwent 2 sessions of 5x30 maximum, isokinetic knee extensions (180°.s-1) separated by 48 hrs. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Dataset:
GDS4820
Platform:
GPL570
45 Samples
Download data: CEL
Series
Accession:
GSE45426
ID:
200045426
11.
Full record GDS4820

Skeletal muscle initial response to concentric resistance exercise training: time course

Analysis of vastus lateralis biopsies taken at the outset (day 1, 2 and 4) of concentric resistance exercise (RE) training in RE naive individuals. Results provide insight into molecular mechanisms underlying the initial transient response of skeletal muscle to concentric RE.
Organism:
Homo sapiens
Type:
Expression profiling by array, transformed count, 2 protocol, 3 time sets
Platform:
GPL570
Series:
GSE45426
45 Samples
Download data: CEL
DataSet
Accession:
GDS4820
ID:
4820
12.

The comparative methylome and transcriptome after change of direction compared to straight line running exercise in human skeletal muscle

(Submitter supplied) The methylome and transcriptome signatures following exercise that are physiologically and metabolically relevant to sporting contexts such as team sports or health prescription scenarios (e.g. high intensity interval training/HIIT) has not been investigated. To explore this, we performed two different sport/exercise relevant high-intensity running protocols in 5 male sport team members using a repeated measures design of: 1) Change of direction (COD) versus; 2) straight line (ST) exercise with a wash-out period of at least 2 weeks between trials. more...
Organism:
Homo sapiens
Type:
Methylation profiling by array
Platform:
GPL21145
16 Samples
Download data: TXT
Series
Accession:
GSE162288
ID:
200162288
13.

Muscle Transcriptome Profile of Resistance Exercise is Augmented by Aerobic Exercise

(Submitter supplied) 10 male subjects performed ~45 min one-legged cycling and 4 x 7 maximal concentric-eccentric knee extensions for each leg 15 min later. Thus, one limb performed aerobic and resistance exercise (AE+RE), while the opposing leg did resistance exercise only (RE). Biopsies were obtained from m. vastus lateralis of each leg 3 h after the resistance exercise bout. Gene expression analysis was carried out on the Affymetrix HuGene-2.1-st platform.
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL17692
20 Samples
Download data: CEL
Series
Accession:
GSE74194
ID:
200074194
14.

Skeletal muscle transcriptome response to a bout of endurance exercise in physically active and sedentary older adults

(Submitter supplied) Age-related declines in cardiorespiratory fitness and physical function are mitigated by regular endurance exercise in older adults. This may be due, in part, to changes in the transcriptional program of skeletal muscle following repeated bouts of exercise. However, the impact of chronic exercise training on the transcriptional response to an acute bout of endurance exercise has not been clearly determined. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24676
57 Samples
Download data: TXT
15.

cDNA microarray analysis of human skeletal muscle after endurance exercise

(Submitter supplied) We examined global mRNA expression using cDNA microarrays in skeletal muscle of humans before, and 3h and 48h after a single bout of exhaustive endurance exercise (cycling). Keywords: Time course
Organism:
Homo sapiens
Type:
Expression profiling by array
Dataset:
GDS1679
Platform:
GPL3457
8 Samples
Download data: GPR
Series
Accession:
GSE4247
ID:
200004247
16.

Buck Institute Human 8k cDNA microarray

(Submitter supplied) 8,432 randomly chosen cDNAs from a 40k Research Genetics human cDNA library were amplified under standard conditions (GeneAmp PCR System 9700) with the help of a volumetric robot (Tecan/Genesis, RSP150 and Tomtec/Quadra 384). Amplified products were transferred to a 384-well plates, purified transferred to 384-well print plates (Genetix), dried and resuspended in print buffer (3xSSC, 1.5M Betaine). more...
Organism:
Homo sapiens
2 DataSets
3 Series
15 Samples
Download data
Platform
Accession:
GPL3457
ID:
100003457
17.
Full record GDS1679

Exhaustive endurance exercise effect on skeletal muscle: time course

Expression profiling of vastus lateralis muscles 3 and 48 hours after a 75-minute bout of high-intensity cycling. Results identify transcriptional pathways activated in skeletal muscles recovering from endurance exercise.
Organism:
Homo sapiens
Type:
Expression profiling by array, log ratio, 2 time sets
Platform:
GPL3457
Series:
GSE4247
8 Samples
Download data: GPR
DataSet
Accession:
GDS1679
ID:
1679
18.

A Molecular Signature Defining Exercise Adaptation and In Vivo Reprogramming in Skeletal Muscle

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platforms:
GPL21103 GPL13112
18 Samples
Download data: COV
Series
Accession:
GSE222335
ID:
200222335
19.

A Molecular Signature Defining Exercise Adaptation and In Vivo Reprogramming in Skeletal Muscle [BiSulfite-seq]

(Submitter supplied) Methylome comparison to elucidate the effects of myc on molecular reprogramming in skeletal muscle tissue.
Organism:
Mus musculus
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL13112
7 Samples
Download data: COV
Series
Accession:
GSE222330
ID:
200222330
20.

A Molecular Signature Defining Exercise Adaptation and In Vivo Reprogramming in Skeletal Muscle [RNA-seq]

(Submitter supplied) Transcriptome comparison to elucidate the effects of exercise on molecular reprogramming in skeletal muscle tissue.
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21103
11 Samples
Download data: TXT
Series
Accession:
GSE222329
ID:
200222329
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