rps19bp1 ribosomal protein S19 binding protein 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rps19bp1provided by ZNC
Official Full Name: ribosomal protein S19 binding protein 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-110316-2
See related: Ensembl:ENSDARG00000091124 AllianceGenome:ZFIN:ZDB-GENE-110316-2
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable enzyme binding activity. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human RPS19BP1 (ribosomal protein S19 binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (265082..268038)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (247030..249989)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables enzyme binding	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: active regulator of SIRT1; ribosomal protein S19 binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386402.1 → NP_001373331.1 ribosomal protein S19 binding protein 1

Status: VALIDATED

Source sequence(s)

CABZ01084579

UniProtKB/TrEMBL

A0A8M2BJX0, E7F0U9

Conserved Domains (1) summary

pfam15684
Location:30 → 131

AROS; Active regulator of SIRT1, or 40S ribosomal protein S19-binding 1

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007117.7 Reference GRCz11 Primary Assembly

Range

265082..268038

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005172057.4 → XP_005172114.1 active regulator of SIRT1

UniProtKB/TrEMBL

E7F0U9

Related

ENSDARP00000111428.1, ENSDART00000123769.3

Conserved Domains (1) summary

pfam15684
Location:30 → 131

AROS; Active regulator of SIRT1, or 40S ribosomal protein S19-binding 1