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htt huntingtin [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100145818, updated on 21-Dec-2023

Summary

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Gene symbol
htt
Gene description
huntingtin
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See htt in Genome Data Viewer
Location:
chromosome: 5
Exon count:
40
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 5 NC_020170.2 (2849504..2872565, complement)

Chromosome 5 - NC_020170.2Genomic Context describing neighboring genes Neighboring gene nucleoplasmin-like protein ANO39 Neighboring gene uncharacterized LOC100185169 Neighboring gene phospholipid phosphatase 5-like Neighboring gene cytochrome P450 2U1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020170.2 Chromosome 5 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for dynamic and multiple roles for huntingtin in Ciona intestinalis. Idris MM, et al. Invert Neurosci, 2013 Dec. PMID 23797324
  2. Huntingtin gene evolution in Chordata and its peculiar features in the ascidian Ciona genus. Gissi C, et al. BMC Genomics, 2006 Nov 8. PMID 17092333, Free PMC Article
  3. Morphological Differences between Larvae of the Ciona intestinalis Species Complex: Hints for a Valid Taxonomic Definition of Distinct Species. Pennati R, et al. PLoS One, 2015. PMID 25955391, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
huntingtin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355427.1 → NP_001342356.1  huntingtin

    Status: VALIDATED

    Source sequence(s)
    AM238514, BW044390, BW220357, EAAA01002166, FF745718
    UniProtKB/TrEMBL
    A5A9V2
    Conserved Domains (2) summary
    sd00044
    Location:65 → 89
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:1323 → 1361
    DUF3652; Huntingtin protein region

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020170.2 Reference KH Primary Assembly

    Range
    2849504..2872565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001126228.1: Suppressed sequence

    Description
    NM_001126228.1: This RefSeq was removed because the source organism cannot be confirmed.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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