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PLS3 plastin 3 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100475279, updated on 8-Mar-2024

Summary

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Gene symbol
PLS3
Gene description
plastin 3
Locus tag
PANDA_020516
See related
Ensembl:ENSAMEG00000002330
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See PLS3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
19
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) X NC_048238.1 (80946389..81026716)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003219441.1 (92827..172637)

Chromosome X - NC_048238.1Genomic Context describing neighboring genes Neighboring gene ATP synthase subunit d, mitochondrial-like Neighboring gene uncharacterized LOC100475680 Neighboring gene 60S ribosomal protein L27a-like Neighboring gene uncharacterized LOC109488417 Neighboring gene angiotensin II receptor type 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin filament network formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin filament bundle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plastin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048238.1 Reference ASM200744v2 Primary Assembly

    Range
    80946389..81026716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011216839.3 → XP_011215141.1  plastin-3

    See identical proteins and their annotated locations for XP_011215141.1

    UniProtKB/TrEMBL
    D2I4I8, G1L6D9
    Related
    ENSAMEP00000002454.2, ENSAMET00000002559.2
    Conserved Domains (5) summary
    cd00051
    Location:16 → 82
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cd21292
    Location:101 → 245
    CH_PLS_rpt1; first calponin homology (CH) domain found in the plastin family
    cd21328
    Location:254 → 375
    CH_PLS3_rpt2; second calponin homology (CH) domain found in plastin-3
    cd21331
    Location:377 → 510
    CH_PLS3_rpt3; third calponin homology (CH) domain found in plastin-3
    cd21334
    Location:519 → 630
    CH_PLS3_rpt4; fourth calponin homology (CH) domain found in plastin-3

  2. XM_034649221.1 → XP_034505112.1  plastin-3

    UniProtKB/TrEMBL
    D2I4I8, G1L6D9
    Conserved Domains (5) summary
    cd00051
    Location:16 → 82
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cd21292
    Location:101 → 245
    CH_PLS_rpt1; first calponin homology (CH) domain found in the plastin family
    cd21328
    Location:254 → 375
    CH_PLS3_rpt2; second calponin homology (CH) domain found in plastin-3
    cd21331
    Location:377 → 510
    CH_PLS3_rpt3; third calponin homology (CH) domain found in plastin-3
    cd21334
    Location:519 → 630
    CH_PLS3_rpt4; fourth calponin homology (CH) domain found in plastin-3

  3. XM_019792919.2 → XP_019648478.1  plastin-3

    UniProtKB/TrEMBL
    D2I4I8, G1L6D9
    Conserved Domains (5) summary
    cd00051
    Location:16 → 82
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cd21292
    Location:101 → 245
    CH_PLS_rpt1; first calponin homology (CH) domain found in the plastin family
    cd21328
    Location:254 → 375
    CH_PLS3_rpt2; second calponin homology (CH) domain found in plastin-3
    cd21331
    Location:377 → 510
    CH_PLS3_rpt3; third calponin homology (CH) domain found in plastin-3
    cd21334
    Location:519 → 630
    CH_PLS3_rpt4; fourth calponin homology (CH) domain found in plastin-3
Nucleotide Protein
Heading Accession and Version

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