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SLC35B2 solute carrier family 35 member B2 [ Sus scrofa (pig) ]

Gene ID: 100516086, updated on 8-Mar-2024

Summary

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Official Symbol
SLC35B2provided by VGNC
Official Full Name
solute carrier family 35 member B2provided by VGNC
Primary source
VGNC:VGNC:93072
See related
Ensembl:ENSSSCG00000001702
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 57.0), spleen (RPKM 36.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SLC35B2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (39250243..39254499, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (45120502..45123937, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110261530 Neighboring gene uncharacterized LOC110261531 Neighboring gene solute carrier family 29 member 1 Neighboring gene heat shock protein 90 alpha family class B member 1 Neighboring gene NFKB inhibitor epsilon Neighboring gene transmembrane protein 151B Neighboring gene t-complex-associated-testis-expressed 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
adenosine 3'-phospho 5'-phosphosulfate transporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    39250243..39254499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003128416.3 → XP_003128464.1  adenosine 3'-phospho 5'-phosphosulfate transporter 1

    UniProtKB/TrEMBL
    A0A4X1V5X1, A0A5G2R1U0, A0A8D1JKI3, F1RQU1
    Related
    ENSSSCP00000001855.3, ENSSSCT00000001902.4
    Conserved Domains (1) summary
    pfam08449
    Location:111 → 412
    UAA; UAA transporter family
Nucleotide Protein
Heading Accession and Version

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