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SOC1 MADS-box protein SOC1-like [ Fragaria vesca (wild strawberry) ]

Gene ID: 101303843, updated on 11-Jan-2024

Summary

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Gene symbol
SOC1
Gene description
MADS-box protein SOC1-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Fragaria vesca
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Genomic context

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See SOC1 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
9
Annotation release Status Assembly LG Location
101 current FraVesHawaii_1.0 (GCF_000184155.1) LG7 NC_020497.1 (6165417..6171667)

Linkage Group LG7 - NC_020497.1Genomic Context describing neighboring genes Neighboring gene putative glutamine amidotransferase YLR126C Neighboring gene lysophospholipid acyltransferase LPEAT2 Neighboring gene probable fructokinase-7 Neighboring gene probable disease resistance protein At4g27220

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020497.1 Chromosome LG7 Reference FraVesHawaii_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of FaSOC1, a homolog of SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 from strawberry. Lei HJ, et al. Gene, 2013 Dec 1. PMID 24055423
  2. The Fragaria vesca homolog of suppressor of overexpression of constans1 represses flowering and promotes vegetative growth. Mouhu K, et al. Plant Cell, 2013 Sep. PMID 24038650, Free PMC Article
  3. Identification of flowering genes in strawberry, a perennial SD plant. Mouhu K, et al. BMC Plant Biol, 2009 Sep 28. PMID 19785732, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Fv SOC1 is regulated by photoperiod and Fv flowering locus T1 (Fv TFL1), suggesting that it plays a central role in the photoperiodic control of both generative and vegetative growth in strawberry
    Title: The Fragaria vesca homolog of suppressor of overexpression of constans1 represses flowering and promotes vegetative growth.
  2. In this study, a SOC1-like gene, FaSOC1, was isolated and characterized from strawberry.
    Title: Identification and characterization of FaSOC1, a homolog of SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 from strawberry.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MADS-box protein SOC1-like
Names
suppressor of overexpression of CO1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280037.1 → NP_001266966.1  MADS-box protein SOC1-like

    See identical proteins and their annotated locations for NP_001266966.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ531999
    UniProtKB/TrEMBL
    C4NF84, G3GAX1
    Conserved Domains (2) summary
    cd00265
    Location:3 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:86 → 172
    K-box; K-box region

RefSeqs of Annotated Genomes: Fragaria vesca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FraVesHawaii_1.0 Primary Assembly

Genomic

  1. NC_020497.1 Reference FraVesHawaii_1.0 Primary Assembly

    Range
    6165417..6171667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011470427.1 → XP_011468729.1  MADS-box protein SOC1-like isoform X1

    See identical proteins and their annotated locations for XP_011468729.1

    UniProtKB/TrEMBL
    G3GAX1
    Conserved Domains (2) summary
    cd00265
    Location:3 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:86 → 172
    K-box; K-box region

  2. XM_011470430.1 → XP_011468732.1  MADS-box protein SOC1-like isoform X2

    See identical proteins and their annotated locations for XP_011468732.1

    UniProtKB/TrEMBL
    G3GAX1
    Conserved Domains (2) summary
    cd00265
    Location:3 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:90 → 171
    K-box; K-box region

  3. XM_011470428.1 → XP_011468730.1  MADS-box protein SOC1-like isoform X1

    See identical proteins and their annotated locations for XP_011468730.1

    UniProtKB/TrEMBL
    G3GAX1
    Conserved Domains (2) summary
    cd00265
    Location:3 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:86 → 172
    K-box; K-box region

  4. XM_011470429.1 → XP_011468731.1  MADS-box protein SOC1-like isoform X2

    See identical proteins and their annotated locations for XP_011468731.1

    UniProtKB/TrEMBL
    G3GAX1
    Conserved Domains (2) summary
    cd00265
    Location:3 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:90 → 171
    K-box; K-box region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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