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LOC102724680 uncharacterized LOC102724680 [ Homo sapiens (human) ]

Gene ID: 102724680, updated on 10-Oct-2023

Summary

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Gene symbol
LOC102724680
Gene description
uncharacterized LOC102724680
See related
Ensembl:ENSG00000289218
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC102724680 in Genome Data Viewer
Location:
12q21.31
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (84912837..84992657)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (84892241..84974543)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369875 Neighboring gene NANOG hESC enhancer GRCh37_chr12:85083456-85083957 Neighboring gene NANOG hESC enhancer GRCh37_chr12:85117712-85118213 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:85198877-85199735 Neighboring gene uncharacterized LOC124903121 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:85305148-85305696 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:85306245-85306792 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:85306793-85307339 Neighboring gene solute carrier family 6 member 15 Neighboring gene NANOG hESC enhancer GRCh37_chr12:85397904-85398436 Neighboring gene Sharpr-MPRA regulatory region 14945 Neighboring gene tetraspanin 19 Neighboring gene leucine rich repeats and IQ motif containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    84912837..84992657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_945152.3 RNA Sequence

  2. XR_945154.3 RNA Sequence

  3. XR_429164.3 RNA Sequence

  4. XR_945155.3 RNA Sequence

  5. XR_007063568.1 RNA Sequence

    Related
    ENST00000688085.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    84892241..84974543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083053.1 RNA Sequence

  2. XR_007083054.1 RNA Sequence

  3. XR_007083056.1 RNA Sequence

  4. XR_007083055.1 RNA Sequence

  5. XR_007083057.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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