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LOC105370384 uncharacterized LOC105370384 [ Homo sapiens (human) ]

Gene ID: 105370384, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105370384
Gene description
uncharacterized LOC105370384
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 2.5), appendix (RPKM 1.3) and 25 other tissues See more
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Genomic context

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See LOC105370384 in Genome Data Viewer
Location:
13q34
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (114250616..114281577, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (113459676..113490637, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114951001-114951592 Neighboring gene CFAP97 domain containing 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114952186-114952777 Neighboring gene Sharpr-MPRA regulatory region 1096 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:114993807-114994308 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8061 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5558 Neighboring gene cell division cycle 16 Neighboring gene microRNA 548ar Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8062 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5559 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:115047057-115047744 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5561 Neighboring gene microRNA 4502 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:115049711-115049907 Neighboring gene uncharacterized LOC124903222 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:115057299-115057800 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:115057801-115058300 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8063 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8064 Neighboring gene UPF3A regulator of nonsense mediated mRNA decay Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:115060371-115060872 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8065 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5562 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8066 Neighboring gene Charcot-Leyden crystal protein pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    114250616..114281577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007063887.1 RNA Sequence

  2. XR_001750059.2 RNA Sequence

  3. XR_007063886.1 RNA Sequence

  4. XR_007063888.1 RNA Sequence

  5. XR_007063885.1 RNA Sequence

  6. XR_001750057.2 RNA Sequence

  7. XR_001750056.2 RNA Sequence

  8. XR_007063889.1 RNA Sequence

  9. XR_001750058.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    113459676..113490637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083751.1 RNA Sequence

  2. XR_007083752.1 RNA Sequence

  3. XR_007083749.1 RNA Sequence

  4. XR_007083753.1 RNA Sequence

  5. XR_007083748.1 RNA Sequence

  6. XR_007083750.1 RNA Sequence

  7. XR_007083747.1 RNA Sequence

  8. XR_007083754.1 RNA Sequence

Nucleotide Protein
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