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LOC105375266 uncharacterized LOC105375266 [ Homo sapiens (human) ]

Gene ID: 105375266, updated on 25-Oct-2023

Summary

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Gene symbol
LOC105375266
Gene description
uncharacterized LOC105375266
See related
Ensembl:ENSG00000230680
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105375266 in Genome Data Viewer
Location:
7p12.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (46476455..46481578, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (46637829..46642952, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375264 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:46054530-46055300 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:46055301-46056071 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:46073125-46073624 Neighboring gene tetratricopeptide repeat domain 4 pseudogene 1 Neighboring gene MPRA-validated peak6509 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25973 Neighboring gene Sharpr-MPRA regulatory region 10400 Neighboring gene zinc finger protein 619 pseudogene 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:46245952-46247151 Neighboring gene Sharpr-MPRA regulatory region 2385 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25974 Neighboring gene Sharpr-MPRA regulatory region 15376 Neighboring gene ZNF619P1-HMGN1P19 intergenic nontranscribed chromatin-defined enhancer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:46574043-46574599 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:46574600-46575155 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:46576337-46576836 Neighboring gene NANOG hESC enhancer GRCh37_chr7:46666250-46666778 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:46690590-46691789 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 19 Neighboring gene uncharacterized LOC730338

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC004869.2, AC004869.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187896.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004869

  2. NR_187898.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004869
    Related
    ENST00000440935.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    46476455..46481578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    46637829..46642952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials