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LOC105378748 uncharacterized LOC105378748 [ Homo sapiens (human) ]

Gene ID: 105378748, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105378748
Gene description
uncharacterized LOC105378748
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378748 in Genome Data Viewer
Location:
1p32.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (57016534..57049270)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (56895584..56928158)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9770 Neighboring gene uncharacterized LOC112267900 Neighboring gene complement C8 alpha chain Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:57577767-57578301 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1080 Neighboring gene complement C8 beta chain Neighboring gene uncharacterized LOC105378747 Neighboring gene DAB adaptor protein 1 Neighboring gene Sharpr-MPRA regulatory region 9062 Neighboring gene Sharpr-MPRA regulatory region 9243 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:57823007-57823637 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:58063767-58063932 Neighboring gene NANOG hESC enhancer GRCh37_chr1:58071492-58072000 Neighboring gene ribosomal protein S20 pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    57016534..57049270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066123.1 RNA Sequence

  2. XR_007066124.1 RNA Sequence

  3. XR_001737649.2 RNA Sequence

  4. XR_001737651.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    56895584..56928158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070245.1 RNA Sequence

  2. XR_007070247.1 RNA Sequence

  3. XR_007070246.1 RNA Sequence

  4. XR_007070248.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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