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si:dkeyp-15a6.2 si:dkeyp-15a6.2 [ Danio rerio (zebrafish) ]

Gene ID: 108183920, updated on 3-Apr-2024

Summary

Official Symbol
si:dkeyp-15a6.2provided by ZNC
Official Full Name
si:dkeyp-15a6.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-081029-4
See related
Ensembl:ENSDARG00000111518 AllianceGenome:ZFIN:ZDB-GENE-081029-4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Annotation information
Annotation category: partial on reference assembly
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Genomic context

See si:dkeyp-15a6.2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (63547167..63557088, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (61973015..61982936, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene gastrula zinc finger protein XlCGF7.1-like Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene transfer RNA leucine (anticodon UAG)

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
NACHT, LRR and PYD domains-containing protein 12-like; uncharacterized protein LOC100136867

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423733.1NP_001410662.1  uncharacterized protein LOC100136867

    Status: VALIDATED

    Source sequence(s)
    BX649497
    UniProtKB/TrEMBL
    A0A8M6Z5Y8

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    63547167..63557088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017355713.1XP_017211202.1  NACHT, LRR and PYD domains-containing protein 12-like

    Related
    ENSDARP00000132285.1, ENSDART00000164415.2

RNA

  1. XR_001798974.2 RNA Sequence

Reference GRCz11 Primary Assembly

Genomic

  1. NW_003336907.1 Reference GRCz11 Primary Assembly

    Range
    393..1184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)