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trmt12 tRNA methyltransferase 12 homolog [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110504438, updated on 15-Mar-2024

Summary

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Gene symbol
trmt12
Gene description
tRNA methyltransferase 12 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 31
Exon count:
6
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 31 NC_050571.1 (28155421..28163913)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 25 NC_035101.1 (23794955..23796741)

Chromosome 31 - NC_050571.1Genomic Context describing neighboring genes Neighboring gene tubulin beta-4B chain Neighboring gene ancient ubiquitous protein 1 Neighboring gene synaptotagmin-like 4 Neighboring gene sushi-repeat containing protein X-linked 2 Neighboring gene tetraspanin-7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Combining next-generation sequencing with microarray for transcriptome analysis in rainbow trout gonads. Hayashi M, et al. Mol Reprod Dev, 2012 Dec. PMID 23109217

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: tRNA wybutosine-synthesizing protein 2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_050571.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    28155421..28163913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036970093.1 → XP_036825988.1  LOW QUALITY PROTEIN: tRNA wybutosine-synthesizing protein 2 homolog

    Conserved Domains (1) summary
    COG2520
    Location:55 → 296
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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