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LOC112268272 uncharacterized LOC112268272 [ Homo sapiens (human) ]

Gene ID: 112268272, updated on 10-Oct-2023

Summary

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Gene symbol
LOC112268272
Gene description
uncharacterized LOC112268272
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1q21.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (148865459..148879084, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (145532230..145545860, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:145116171-145116728 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:145115612-145116170 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:145111649-145112460 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:145108701-145108867 Neighboring gene SEC22 homolog B3, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr1:145085325-145085826 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:145075157-145075794 Neighboring gene NANOG hESC enhancer GRCh37_chr1:145058822-145059364 Neighboring gene phosphodiesterase 4D interacting protein Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:145047676-145048176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:145039786-145040507 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:145039063-145039785 Neighboring gene NANOG hESC enhancer GRCh37_chr1:145028802-145029303 Neighboring gene RN7SK pseudogene 88 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:145023082-145023696 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:145022466-145023081 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:145015143-145015643 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144994512-144995132 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144993892-144994511 Neighboring gene NANOG hESC enhancer GRCh37_chr1:144976465-144977040 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:144966957-144967786 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:144961997-144962606 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144937763-144938539 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:144936334-144936835 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:144932913-144933661 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr1:144931414-144932162 and GRCh37_chr1:144932163-144932912 Neighboring gene RNA, U2 small nuclear 38, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:144891435-144892634 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:144867459-144868658 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:144850469-144850968 Neighboring gene NBPF member 9 Neighboring gene profilin-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    148865459..148879084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066544.1 RNA Sequence

  2. XR_002958601.2 RNA Sequence

  3. XR_007066545.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    145532230..145545860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070641.1 RNA Sequence

  2. XR_007070643.1 RNA Sequence

  3. XR_007070642.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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