gjc4a.1 gap junction protein gamma 4a.1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: gjc4a.1provided by ZNC
Official Full Name: gap junction protein gamma 4a.1provided by ZNC
Primary source: ZFIN:ZDB-GENE-010619-1
See related: Ensembl:ENSDARG00000034207 AllianceGenome:ZFIN:ZDB-GENE-010619-1
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: gjc4a; cx44.2; fk18g12; wu:fk18g12; etID18867.6
Summary: Predicted to enable gap junction channel activity. Predicted to be involved in cell-cell signaling. Predicted to act upstream of or within cell communication. Predicted to be located in gap junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of connexin complex. Is expressed in Kupffer's vesicle; ovary; and testis. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 6

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (21001455..21009814)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (18941233..18949540)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

fc03f03.x1 (e-PCR)
- UniSTS:192123

fi76e05.x1 (e-PCR)
- UniSTS:198012

fc03f03.x1 (e-PCR)
- UniSTS:192124

fk18g12.y1 (e-PCR)
- UniSTS:200620

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables gap junction channel activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell communication	IEA Inferred from Electronic Annotation more info
involved_in cell-cell signaling	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in anchoring junction	IEA Inferred from Electronic Annotation more info
part_of connexin complex	IBA Inferred from Biological aspect of Ancestor more info
part_of connexin complex	IEA Inferred from Electronic Annotation more info
located_in gap junction	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: connexin 44.2; gap junction protein gamma 4a.1

Names: gap junction protein gamma 4a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_131810.2 → NP_571885.2 gap junction protein gamma 4a.1

See identical proteins and their annotated locations for NP_571885.2

Status: PROVISIONAL

Source sequence(s)

BC045279

UniProtKB/TrEMBL

Q7ZU26

Related

ENSDARP00000044518.5, ENSDART00000044519.6

Conserved Domains (3) summary

smart00037
Location:43 → 75

CNX; Connexin homologues

smart01089
Location:193 → 259

Connexin_CCC; Gap junction channel protein cysteine-rich domain

pfam00029
Location:2 → 261

Connexin; Connexin

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007117.7 Reference GRCz11 Primary Assembly

Range

21001455..21009814

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021476749.1 → XP_021332424.1 connexin 44.2 isoform X1

UniProtKB/TrEMBL

A0A8M9Q5X3, F1QYI2

Conserved Domains (1) summary

pfam00029
Location:2 → 261

Connexin; Connexin
XM_005166218.4 → XP_005166275.1 connexin 44.2 isoform X1

UniProtKB/TrEMBL

A0A8M9Q5X3, F1QYI2

Conserved Domains (1) summary

pfam00029
Location:2 → 261

Connexin; Connexin