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dido1 death inducer-obliterator 1 [ Morone saxatilis (striped sea-bass) ]

Gene ID: 118328676, updated on 20-Mar-2024

Summary

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Gene symbol
dido1
Gene description
death inducer-obliterator 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Morone saxatilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Moronidae; Morone
Orthologs
zebrafish all
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Genomic context

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See dido1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current NCSU_SB_2.0 (GCF_004916995.1) Unplaced Scaffold NW_023339740.1 (6709196..6729004)

NW_023339740.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor coactivator 3 Neighboring gene zinc finger, MYND-type containing 8 Neighboring gene opioid growth factor receptor-like Neighboring gene potassium channel subfamily K member 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023339740 Unplaced Scaffold Reference NCSU_SB_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome annotation and marker discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis). Li C, et al. Anim Genet, 2014 Dec. PMID 25160849

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
death-inducer obliterator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Morone saxatilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_SB_2.0 Primary Assembly

Genomic

  1. NW_023339740.1 Reference NCSU_SB_2.0 Primary Assembly

    Range
    6709196..6729004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035662549.1 → XP_035518442.1  death-inducer obliterator 1 isoform X1

    Conserved Domains (6) summary
    PTZ00121
    Location:37 → 337
    PTZ00121; MAEBL; Provisional
    PRK07764
    Location:2168 → 2394
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15639
    Location:384 → 437
    PHD_DIDO1_like; PHD finger found in death-inducer obliterator variants Dido1, Dido2, and Dido3
    pfam07500
    Location:903 → 1007
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1303 → 1451
    SPOC; SPOC domain
    NF033804
    Location:701 → 849
    Streccoc_I_II; antigen I/II family LPXTG-anchored adhesin

  2. XM_035662553.1 → XP_035518446.1  death-inducer obliterator 1 isoform X5

    Conserved Domains (6) summary
    PTZ00121
    Location:37 → 337
    PTZ00121; MAEBL; Provisional
    PRK07764
    Location:2152 → 2378
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15639
    Location:384 → 437
    PHD_DIDO1_like; PHD finger found in death-inducer obliterator variants Dido1, Dido2, and Dido3
    pfam07500
    Location:903 → 1007
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1287 → 1435
    SPOC; SPOC domain
    NF033804
    Location:701 → 849
    Streccoc_I_II; antigen I/II family LPXTG-anchored adhesin

  3. XM_035662551.1 → XP_035518444.1  death-inducer obliterator 1 isoform X3

    Conserved Domains (6) summary
    PTZ00121
    Location:37 → 337
    PTZ00121; MAEBL; Provisional
    PRK07764
    Location:2167 → 2393
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15639
    Location:384 → 437
    PHD_DIDO1_like; PHD finger found in death-inducer obliterator variants Dido1, Dido2, and Dido3
    pfam07500
    Location:902 → 1006
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1302 → 1450
    SPOC; SPOC domain
    NF033804
    Location:700 → 848
    Streccoc_I_II; antigen I/II family LPXTG-anchored adhesin

  4. XM_035662550.1 → XP_035518443.1  death-inducer obliterator 1 isoform X2

    Conserved Domains (6) summary
    PTZ00121
    Location:37 → 337
    PTZ00121; MAEBL; Provisional
    PRK07764
    Location:2167 → 2393
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15639
    Location:384 → 437
    PHD_DIDO1_like; PHD finger found in death-inducer obliterator variants Dido1, Dido2, and Dido3
    pfam07500
    Location:902 → 1006
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1302 → 1450
    SPOC; SPOC domain
    NF033804
    Location:700 → 848
    Streccoc_I_II; antigen I/II family LPXTG-anchored adhesin

  5. XM_035662552.1 → XP_035518445.1  death-inducer obliterator 1 isoform X4

    Conserved Domains (6) summary
    PTZ00121
    Location:37 → 337
    PTZ00121; MAEBL; Provisional
    PRK07764
    Location:2164 → 2390
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15639
    Location:384 → 437
    PHD_DIDO1_like; PHD finger found in death-inducer obliterator variants Dido1, Dido2, and Dido3
    pfam07500
    Location:899 → 1003
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1299 → 1447
    SPOC; SPOC domain
    NF033804
    Location:697 → 845
    Streccoc_I_II; antigen I/II family LPXTG-anchored adhesin

  6. XM_035662554.1 → XP_035518447.1  death-inducer obliterator 1 isoform X6

    Conserved Domains (6) summary
    COG5271
    Location:117 → 202
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK07764
    Location:2088 → 2314
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15639
    Location:304 → 357
    PHD_DIDO1_like; PHD finger found in death-inducer obliterator variants Dido1, Dido2, and Dido3
    pfam07500
    Location:823 → 927
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1223 → 1371
    SPOC; SPOC domain
    NF033804
    Location:621 → 769
    Streccoc_I_II; antigen I/II family LPXTG-anchored adhesin
Nucleotide Protein
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