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LOC119563584 butyrophilin subfamily 1 member A1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 119563584, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119563584
Gene description
butyrophilin subfamily 1 member A1
Locus tag
UY3_14108
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
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Genomic context

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See LOC119563584 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
25
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 23 NC_051263.2 (14897989..14978949, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 23 Unlocalized Scaffold NW_023618337.1 (4519304..4602873, complement)

Chromosome 23 - NC_051263.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122463656 Neighboring gene leukocyte immunoglobulin-like receptor subfamily A member 6 Neighboring gene E3 ubiquitin-protein ligase TRIM7 Neighboring gene THAP domain containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
butyrophilin subfamily 1 member A1
Names
Butyrophilin-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051263.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    14897989..14978949 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043534643.1 → XP_043390578.1  butyrophilin subfamily 1 member A1 isoform X2

    Conserved Domains (3) summary
    smart00409
    Location:80 → 179
    IG; Immunoglobulin
    TIGR02169
    Location:463 → 556
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd13733
    Location:521 → 689
    SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty

  2. XM_043534642.1 → XP_043390577.1  butyrophilin subfamily 1 member A1 isoform X1

    Conserved Domains (4) summary
    smart00409
    Location:380 → 417
    IG; Immunoglobulin
    smart00410
    Location:80 → 179
    IG_like; Immunoglobulin like
    TIGR02169
    Location:435 → 553
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd13733
    Location:563 → 731
    SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty
Nucleotide Protein
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