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LOC127399271 H3K4me1 hESC enhancer GRCh37_chr3:183195987-183196522 [ Homo sapiens (human) ]

Gene ID: 127399271, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127399271
Gene description
H3K4me1 hESC enhancer GRCh37_chr3:183195987-183196522
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127399271 in Genome Data Viewer
Location:
chromosome: 3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (183478199..183478734)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (186286354..186286889)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA host gene 33 Neighboring gene small nucleolar RNA, H/ACA box 63E Neighboring gene TVP23C pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20889 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:183216746-183216942 Neighboring gene kelch like family member 6 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:183225616-183226815 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20891 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:183236404-183236904 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20892 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20893 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20894 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14941 Neighboring gene KLHL6 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14942 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:183280328-183280828 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:183280829-183281329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20895 Neighboring gene Sharpr-MPRA regulatory region 1359 Neighboring gene PRICKLE1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_101237.1 

    Range
    101..636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    183478199..183478734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    186286354..186286889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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