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LOC127402219 NANOG-H3K4me1 hESC enhancer GRCh37_chr5:1024745-1025404 [ Homo sapiens (human) ]

Gene ID: 127402219, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127402219
Gene description
NANOG-H3K4me1 hESC enhancer GRCh37_chr5:1024745-1025404
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer associates with the NANOG transcription factor and is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127402219 in Genome Data Viewer
Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (1024630..1025289)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (929397..930061)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:991246-991960 Neighboring gene long intergenic non-protein coding RNA 2982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:994888-995388 Neighboring gene uncharacterized LOC124900932 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1004327-1004970 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1004971-1005615 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1005616-1006259 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1007413-1008178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1008179-1008944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1017054-1017554 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1018687-1019370 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1022097-1022758 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1025625-1026127 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1026128-1026629 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1026630-1027132 Neighboring gene NKD inhibitor of WNT signaling pathway 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1028355-1028856 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1038746-1039520 Neighboring gene solute carrier family 12 member 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1067605-1068104 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1068827-1069326 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1073082-1073636 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1073637-1074191 Neighboring gene microRNA 4635 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1099659-1100505 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1100506-1101352 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:1106433-1107278 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:1117531-1118064 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1119135-1119668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1128375-1128908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1129443-1129976 Neighboring gene uncharacterized LOC107986396 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1131579-1132112

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_104178.1 

    Range
    101..760
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    1024630..1025289
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187548.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    43137..43796
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    929397..930061
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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