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LINC01104 long intergenic non-protein coding RNA 1104 [ Homo sapiens (human) ]

Gene ID: 150577, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01104provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1104provided by HGNC
Primary source
HGNC:HGNC:49226
See related
Ensembl:ENSG00000232084 AllianceGenome:HGNC:49226
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01104 in Genome Data Viewer
Location:
2q11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (100208254..100251484)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (100667175..100710399)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (100824716..100867946)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ALF transcription elongation factor 3 Neighboring gene uncharacterized LOC124906051 Neighboring gene uncharacterized LOC105373504 Neighboring gene MPRA-validated peak3800 silencer Neighboring gene MPRA-validated peak3801 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:100483776-100484975 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:100521553-100522052 Neighboring gene Sharpr-MPRA regulatory region 9249 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:100735506-100736449 Neighboring gene fragile site, folic acid type, rare, fra(2)(q11.2) Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16290 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:100865373-100866572 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:100871469-100871968 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11813 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:100907393-100908033 Neighboring gene LON peptidase N-terminal domain and ring finger 2 Neighboring gene CYCS pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes. Todd JA, et al. Nat Genet, 2007 Jul. PMID 17554260, Free PMC Article
  2. Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. Stahl EA, et al. Nat Genet, 2010 Jun. PMID 20453842, Free PMC Article
  3. Genetics of rheumatoid arthritis contributes to biology and drug discovery. Okada Y, et al. Nature, 2014 Feb 20. PMID 24390342, Free PMC Article
  4. High-content genome-wide RNAi screens identify regulators of parkin upstream of mitophagy. Hasson SA, et al. Nature, 2013 Dec 12. PMID 24270810, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genetics of rheumatoid arthritis contributes to biology and drug discovery.
EBI GWAS Catalog
Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.
EBI GWAS Catalog
Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • AC104782.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103730.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104782
    Related
    ENST00000452354.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    100208254..100251484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    100667175..100710399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001102655.1: Suppressed sequence

    Description
    NM_001102655.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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