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CST13P cystatin 13, pseudogene [ Homo sapiens (human) ]

Gene ID: 164380, updated on 10-Oct-2023

Summary

Official Symbol
CST13Pprovided by HGNC
Official Full Name
cystatin 13, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:44335
See related
Ensembl:ENSG00000290388 AllianceGenome:HGNC:44335
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CSTT; CTES6
Expression
Restricted expression toward testis (RPKM 14.6) See more
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Genomic context

Location:
20p11.21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (23519146..23542018)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (23578714..23601574)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (23499783..23522655)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 1881 Neighboring gene cystatin 12, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:23471218-23471718 Neighboring gene cystatin 8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17642 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:23513598-23514559 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:23515257-23515934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:23515935-23516610 Neighboring gene cystatin 9-like pseudogene 1 Neighboring gene cystatin 9 like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • cystatin T
  • cystatin pseudogene

Clone Names

  • MGC26611, MGC26924, MGC41912, IMAGE:4837709

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001279.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC024006, BC041171
    Related
    ENST00000400563.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    23519146..23542018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    23578714..23601574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)