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tag-96 GHMP kinase C-terminal domain-containing protein;Galactokinase [ Caenorhabditis elegans ]

Gene ID: 171755, updated on 12-Jun-2024

Summary

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Gene symbol
tag-96
Gene description
GHMP kinase C-terminal domain-containing protein;Galactokinase
Locus tag
CELE_M01D7.4
See related
AllianceGenome:WB:WBGene00006461
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable galactokinase activity. Predicted to be involved in galactose metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in intestine; pharyngeal gland cell; and reproductive system. Orthologous to human GALK2 (galactokinase 2). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See tag-96 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (1845200..1850523)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Emerin homolog 1 Neighboring gene Neuropeptide-Like Protein Neighboring gene 7TM_GPCR_Srx domain-containing protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables galactokinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables galactokinase activity IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphotransferase activity, alcohol group as acceptor IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate phosphorylation IEA
Inferred from Electronic Annotation
more info
  
involved_in galactose metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in galactose metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in organic substance metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in phosphorus metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
  
involved_in primary metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
GHMP kinase C-terminal domain-containing protein;Galactokinase
NP_001293356.1
  • Confirmed by transcript evidence
NP_490909.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    1845200..1850523
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_058508.4 → NP_490909.2  Galactokinase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_490909.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O01969
    Conserved Domains (1) summary
    PLN02521
    Location:5 → 409
    PLN02521; galactokinase

  2. NM_001306427.3 → NP_001293356.1  GHMP kinase C-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293356.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    X5LVA8
    Conserved Domains (1) summary
    PLN02521
    Location:1 → 231
    PLN02521; galactokinase
Nucleotide Protein
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