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tyms-1 Thymidylate synthase [ Caenorhabditis elegans ]

Gene ID: 172149, updated on 12-Jun-2024

Summary

Gene symbol
tyms-1
Gene description
Thymidylate synthase
Locus tag
CELE_Y110A7A.4
See related
AllianceGenome:WB:WBGene00022455
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Enables thymidylate synthase activity. Involved in dTMP biosynthetic process. Predicted to be active in cytosol and mitochondrion. Human ortholog(s) of this gene implicated in gastrointestinal system cancer (multiple); hematologic cancer (multiple); and rheumatoid arthritis. Orthologous to human TYMS (thymidylate synthetase). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See tyms-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003279.8 (5138250..5139382)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene 6-phosphofructo-2-kinase domain-containing protein Neighboring gene Myotubularin-related protein 1 Neighboring gene ncRNA Neighboring gene Acetylcholine receptor subunit alpha-type unc-63 Neighboring gene MATH domain-containing protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables thymidylate synthase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables thymidylate synthase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables thymidylate synthase activity IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity, transferring one-carbon groups IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in dTMP biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in dTMP biosynthetic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in dTMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
involved_in dTTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
involved_in methylation IEA
Inferred from Electronic Annotation
more info
 
involved_in nucleotide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
Thymidylate synthase
NP_491532.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    5138250..5139382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059131.8NP_491532.3  Thymidylate synthase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491532.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N588, Q9Y052
    Conserved Domains (1) summary
    PTZ00164
    Location:1312
    PTZ00164; bifunctional dihydrofolate reductase-thymidylate synthase; Provisional